myRT

myRT report for GCA_006349175.1_ASM634917v1

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Seq: QRGG01000054.1 (9687 bp)
Overview 1 RT 1: 2141-7866 bp Neighborhood of RT #1 [2141, 8084] FimC FimD RVT-UG4 Integrase_1 Feature: gene Location: 2141-2869 bp Feature: domain Description: FimC Location: 2189-2852 bp Feature: domain Description: FimC Location: 21 89-2852 bp Feature: gene Location: 2901-5510 bp Feature: domain Description: FimD Location: 2958-5499 bp Feature: domain Description: FimD Location: 2958-5499 bp Feature: gene Location: 5510-6751 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5918-6362 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 591 8-6362 bp Feature: gene Location: 6748-7587 bp Feature: gene Location: 7644-8084 bp Feature: domain Description: Integrase_1 Location: 7650-7866 bp Feature: domain Description: Integrase_1 Location: 7650-7866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835)

Seq: QRGG01000055.1 (9254 bp)
Overview 1 RT 1: 4833-9252 bp Neighborhood of RT #1 [4833, 9251] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 4833-5066 bp Feature: gene Location: 5154-5708 bp Feature: domain Description: N6_acetyl_AAC6 Location: 5157-5706 bp Feature: domain Description: N6_acetyl_AAC6 Location: 5157-5706 bp Feature: gene Location: 6429-7682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6621-7245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662 1-72 45 bp Feature: domain Description: GIIM Note: maturase Location: 7284-7503 bp Feature: domain Description: GIIM Note: maturase Location: 72 84-7503 bp Feature: gene Location: 7763-8215 bp Feature: domain Description: Arr-ms Location: 7823-8129 bp Feature: domain Description: Arr-ms Location: 782 3-812 9 bp Feature: gene Location: 8388-9251 bp Feature: domain Description: PRK15417 Location: 8391-9252 bp Feature: domain Description: PRK15417 Location: 8391-92 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), Arr-ms (pfam12120), PRK15417 (integron integrase)