myRT

myRT report for GCA_006439385.1_ASM643938v1

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Seq: VFTL01000021.1 (133274 bp)
Overview 1 RT 1: 118563-124369 bp Neighborhood of RT #1 [118563, 124380] COG0610 DUF45 RVT-UNC Arc StbC Feature: gene Location: 118563-121610 bp Feature: domain Description: COG0610 Location: 118593-121347 bp Feature: domain Description: COG061 0 Location: 1 1 8593-1 21 347 bp Feature: gene Location: 121600-122322 bp Feature: domain Description: DUF45 Location: 121678-122290 bp Feature: domain Description: DUF45 Location: 1 21 678-1 22290 bp Feature: gene Location: 122384-123712 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 122726-123290 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 22726-1 23290 bp Feature: gene Location: 123793-124089 bp Feature: domain Description: Arc Location: 123814-123943 bp Feature: domain Description: Arc Location: 1 2381 4-1 23943 bp Feature: gene Location: 124225-124380 bp Feature: domain Description: StbC Location: 124243-124369 bp Feature: domain Description: StbC Location: 1 24243-1 24369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG11/RVT-CRISPR/RVT-GII/RVT-G2L4(RVT-UNC), Arc (pfam03869), StbC (COG4691)

Seq: VFTL01000074.1 (6438 bp)
Overview 1 RT 1: 2459-4996 bp Neighborhood of RT #1 [2459, 5022] DUF1656 EmrA RVT-GII group_II_RT_mat CHAD Feature: gene Location: 2459-2668 bp Feature: domain Description: DUF1656 Location: 2474-2636 bp Feature: domain Description: DUF1656 Location: 2 474-2 636 bp Feature: gene Location: 2710-3564 bp Feature: domain Description: EmrA Location: 2716-3532 bp Feature: domain Description: EmrA Location: 2 716-3532 bp Feature: gene Location: 3768-4154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885-4053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885-4053 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4056-4149 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4056-4149 bp Feature: gene Location: 4164-4415 bp Feature: gene Location: 4831-5022 bp Feature: domain Description: CHAD Location: 4834-4996 bp Feature: domain Description: CHAD Location: 4834-4996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1656 (pfam07869), EmrA (COG1566), RVT-GII, group_II_RT_mat (TIGR04416), CHAD (smart00880)

Seq: VFTL01000014.1 (148822 bp)
Overview 1 RT 1: 92516-96773 bp Neighborhood of RT #1 [92516, 96862] fliR RVT-Retrons DUF4145 Feature: gene Location: 92516-93268 bp Feature: domain Description: fliR Location: 92531-93248 bp Feature: domain Description: fliR Location: 9253 1-93 248 bp Feature: gene Location: 93271-93654 bp Feature: gene Location: 93922-95664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94069-94705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94069-94705 bp Feature: gene Location: 95882-96058 bp Feature: gene Location: 96458-96862 bp Feature: domain Description: DUF4145 Location: 96530-96773 bp Feature: domain Description: DUF4145 Location: 9653 0-96773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fliR (TIGR01400), RVT-Retrons, DUF4145 (pfam13643)

Seq: VFTL01000001.1 (386573 bp)
Overview 1 RT 1: 29919-35509 bp Neighborhood of RT #1 [29919, 35595] DUF4145 YbjD YbjD RVT-UG7 Crp DUF2388 Feature: gene Location: 29919-30680 bp Feature: domain Description: DUF4145 Location: 30312-30576 bp Feature: domain Description: DUF4 14 5 Location: 30312-30576 bp Feature: gene Location: 30826-32466 bp Feature: domain Description: YbjD Location: 30829-30982 bp Feature: domain Description: YbjD Location: 30829-30982 bp Feature: domain Description: YbjD Location: 31204-32152 bp Feature: domain Description: YbjD Location: 31204 -32152 bp Feature: gene Location: 32776-34269 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 33091-33487 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 33091-334 87 bp Feature: gene Location: 34567-35265 bp Feature: domain Description: Crp Location: 34645-35188 bp Feature: domain Description: Crp Location: 34 64 5-35188 bp Feature: gene Location: 35350-35595 bp Feature: domain Description: DUF2388 Location: 35392-35509 bp Feature: domain Description: DUF2388 Location: 35392-35509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), YbjD (COG3593), RVT-UG7, Crp (pfam00325), DUF2388 (pfam09498)

Seq: VFTL01000003.1 (244351 bp)
Overview 1 RT 1: 15907-19168 bp Neighborhood of RT #1 [15907, 19168] HTH_17 HTH_17 RVT-UNC Feature: gene Location: 15907-16104 bp Feature: domain Description: HTH_17 Location: 15931-16078 bp Feature: domain Description: HTH_17 Location: 15 931-16078 bp Feature: gene Location: 16147-16383 bp Feature: domain Description: HTH_17 Location: 16219-16360 bp Feature: domain Description: HTH_17 Location: 16219-16360 bp Feature: gene Location: 16380-17552 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 16668-17208 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 16668-17208 bp Feature: gene Location: 18261-18395 bp Feature: gene Location: 18848-19168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC)