myRT

myRT report for GCA_006483415.1_ASM648341v1

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Seq: PPPS01000065.1 (59446 bp)
Overview 1 RT 1: 39440-43948 bp Neighborhood of RT #1 [39440, 44004] FMN_nitrolo RutF RVT-GII RVT-GII COG3547 Feature: gene Location: 39440-40801 bp Feature: domain Description: FMN_nitrolo Location: 39464-40742 bp Feature: domain Description: FMN_nitrolo Location: 39464-40742 bp Feature: gene Location: 40909-41406 bp Feature: domain Description: RutF Location: 40954-41392 bp Feature: domain Description: RutF Location: 40954-41 392 bp Feature: gene Location: 41567-41695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41573-41657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 573-41 657 bp Feature: gene Location: 41786-42193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41891-42047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 891 -42047 bp Feature: gene Location: 42307-42675 bp Feature: gene Location: 42967-44004 bp Feature: domain Description: COG3547 Location: 42982-43948 bp Feature: domain Description: COG3547 Location: 42982-43948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FMN_nitrolo (TIGR03860), RutF (TIGR03615), RVT-GII, COG3547 (Transposase )

Seq: PPPS01000037.1 (13901 bp)
Overview 1 RT 1: 3632-6365 bp Neighborhood of RT #1 [3632, 6365] PRK06946 RVT-GII Feature: gene Location: 3632-4513 bp Feature: domain Description: PRK06946 Location: 3644-4511 bp Feature: domain Description: PRK06946 Location: 3644-4511 bp Feature: gene Location: 4763-5041 bp Feature: gene Location: 4989-5609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5337-5535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5337-5535 bp Feature: gene Location: 5667-5870 bp Feature: gene Location: 5931-6365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06946 (lipid A biosynthesis lauroyl acyltransferase; Provisional), RVT-GII

Seq: PPPS01000012.1 (69767 bp)
Overview 1 RT 1: 318-12045 bp Neighborhood of RT #1 [318, 12047] PDC1_DGC_like HAMP PAS_4 GGDEF RVT-UG1 PHA02415 DUF1484 Feature: gene Location: 318-2291 bp Feature: domain Description: PDC1_DGC_like Location: 504-852 bp Feature: domain Description: PDC1_DGC_like Location: 504-852 bp Feature: domain Description: HAMP Location: 1212-1365 bp Feature: domain Description: HAMP Location: 1212-13 65 bp Feature: domain Description: PAS_4 Location: 1440-1755 bp Feature: domain Description: PAS_4 Location: 1440-1755 bp Feature: domain Description: GGDEF Location: 1794-2262 bp Feature: domain Description: GGDEF Location: 1794-2262 bp Feature: gene Location: 2498-3154 bp Feature: gene Location: 3484-7449 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4216-4735 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4216-473 5 bp Feature: gene Location: 8890-11694 bp Feature: domain Description: PHA02415 Location: 8929-11656 bp Feature: domain Description: PHA02415 Location: 8929-11656 bp Feature: gene Location: 11703-12047 bp Feature: domain Description: DUF1484 Location: 11739-12045 bp Feature: domain Description: DUF1484 Location: 1173 9-12045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDC1_DGC_like (cd12914), HAMP (smart00304), PAS_4 (pfam08448), GGDEF (TIGR00254), RVT-UG1, PHA02415 (DNA primase domain-containing protein), DUF1484 (pfam07363)

Seq: PPPS01000046.1 (59531 bp)
Overview 1 RT 1: 55613-59335 bp Neighborhood of RT #1 [55613, 59421] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 55613-56170 bp Feature: gene Location: 56457-57572 bp Feature: domain Description: DDE_Tnp_IS66 Location: 56547-57414 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5654 7-574 14 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 57435-57549 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 574 35-5754 9 bp Feature: gene Location: 58102-59421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58405-59044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584 05-5904 4 bp Feature: domain Description: GIIM Note: maturase Location: 59116-59335 bp Feature: domain Description: GIIM Note: maturase Location: 59116-59335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: PPPS01000045.1 (36448 bp)
Overview 1 RT 1: 25716-29846 bp Neighborhood of RT #1 [25716, 29998] RVT_N RVT-GII YkfC HNHc InsQ AcrR Feature: gene Location: 25716-25997 bp Feature: gene Location: 26016-26237 bp Feature: gene Location: 26414-28126 bp Feature: domain Description: RVT_N Location: 26468-26711 bp Feature: domain Description: RVT_N Location: 26468-26711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26756-27398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2675 6-27398 bp Feature: domain Description: YkfC Location: 27404-27725 bp Feature: domain Description: YkfC Location: 27404-27725 bp Feature: domain Description: HNHc Note: nucleases Location: 27914-28073 bp Feature: domain Description: HNHc Note: nucleases Location: 27914-28073 bp Feature: gene Location: 28180-29163 bp Feature: domain Description: InsQ Location: 28459-29140 bp Feature: domain Description: InsQ Location: 2845 9-29140 bp Feature: gene Location: 29177-29998 bp Feature: domain Description: AcrR Location: 29255-29846 bp Feature: domain Description: AcrR Location: 2925 5 -29846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), InsQ (COG0675), AcrR (COG1309)