myRT

myRT report for GCA_006540945.2_ASM654094v2

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Seq: SUOD02000060.1 (12978 bp)
Overview 1 RT 1: 5739-9927 bp Neighborhood of RT #1 [5739, 9927] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 5739-6410 bp Feature: domain Description: Plasmid_stab_B Location: 5754-5961 bp Feature: domain Description: Plasmid_stab_B Location: 5754-5961 bp Feature: domain Description: Plasmid_stab_B Location: 6066-6273 bp Feature: domain Description: Plasmid_stab_B Location: 6066-6273 bp Feature: gene Location: 6413-7384 bp Feature: domain Description: StbA Location: 6416-7361 bp Feature: domain Description: StbA Location: 641 6-7361 bp Feature: gene Location: 7633-9120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8038-8728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8038-8728 bp Feature: gene Location: 9126-9293 bp Feature: gene Location: 9532-9927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII

Seq: SUOD02000038.1 (36450 bp)
Overview 1 RT 1: 28945-35813 bp Neighborhood of RT #1 [28945, 35815] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 28945-29673 bp Feature: domain Description: FimC Location: 28993-29656 bp Feature: domain Description: FimC Location: 2 8993-2 9656 bp Feature: gene Location: 29705-32314 bp Feature: domain Description: FimD Location: 29762-32303 bp Feature: domain Description: FimD Location: 2 9762 -32 303 bp Feature: gene Location: 32314-34392 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32722-33166 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32 72 2 -33166 bp Feature: gene Location: 34449-34889 bp Feature: domain Description: Integrase_1 Location: 34455-34671 bp Feature: domain Description: Integrase_1 Location: 34455-34671 bp Feature: gene Location: 35150-35815 bp Feature: domain Description: INT_P4_C Location: 35255-35813 bp Feature: domain Description: INT_P4_C Location: 352 55-35813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: SUOD02000082.1 (1070 bp)
Overview 1 RT 1: 1-919 bp Neighborhood of RT #1 [1, 1068] RVT-GII Feature: gene Location: 1-1068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229-919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII