myRT

myRT report for GCA_006542015.2_ASM654201v2

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Seq: SUOW02000079.1 (7622 bp)
Overview 1 RT 1: 6023-7621 bp Neighborhood of RT #1 [6023, 7620] PRK10276 RVT-GII Feature: gene Location: 6023-6448 bp Feature: domain Description: PRK10276 Location: 6026-6434 bp Feature: domain Description: PRK1 0276 Location: 6026-6434 bp Feature: gene Location: 6566-6799 bp Feature: gene Location: 6850-7620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7255-7621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7255-7621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SUOW02000187.1 (473 bp)
Overview 1 RT 1: 1-358 bp Neighborhood of RT #1 [1, 471] RVT-GII Feature: gene Location: 1-471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SUOW02000040.1 (39470 bp)
Overview 1 RT 1: 32010-38878 bp Neighborhood of RT #1 [32010, 38880] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 32010-32738 bp Feature: domain Description: FimC Location: 32058-32721 bp Feature: domain Description: FimC Location: 3 2058-3 2721 bp Feature: gene Location: 32770-35379 bp Feature: domain Description: FimD Location: 32827-35368 bp Feature: domain Description: FimD Location: 3 2827-3 53 68 bp Feature: gene Location: 35379-37457 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 35787-36231 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 5787-3 623 1 bp Feature: gene Location: 37514-37954 bp Feature: domain Description: Integrase_1 Location: 37520-37736 bp Feature: domain Description: Integrase_1 Location: 3 7520-3 773 6 bp Feature: gene Location: 38215-38880 bp Feature: domain Description: INT_P4_C Location: 38320-38878 bp Feature: domain Description: INT_P4_C Location: 3 83 20-3 8878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: SUOW02000082.1 (7571 bp)
Overview 1 RT 1: 332-4520 bp Neighborhood of RT #1 [332, 4520] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 332-1003 bp Feature: domain Description: Plasmid_stab_B Location: 347-554 bp Feature: domain Description: Plasmid_stab_B Location: 34 7-554 bp Feature: domain Description: Plasmid_stab_B Location: 659-866 bp Feature: domain Description: Plasmid_stab_B Location: 659-866 bp Feature: gene Location: 1006-1977 bp Feature: domain Description: StbA Location: 1009-1954 bp Feature: domain Description: StbA Location: 1009-1954 bp Feature: gene Location: 2226-3713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-3321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-3321 bp Feature: gene Location: 3719-3886 bp Feature: gene Location: 4125-4520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII