myRT

myRT report for GCA_006542765.1_ASM654276v1

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Seq: SKCD01000015.1 (132069 bp)
Overview 1 RT 1: 56334-59212 bp Neighborhood of RT #1 [56334, 59212] TatC tatA RVT-GII GIIM Feature: gene Location: 56334-57080 bp Feature: domain Description: TatC Location: 56355-57054 bp Feature: domain Description: TatC Location: 56355-57054 bp Feature: gene Location: 57103-57306 bp Feature: domain Description: tatA Location: 57106-57268 bp Feature: domain Description: tatA Location: 571 06-57268 bp Feature: gene Location: 57402-58664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57597-58215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57597-5821 5 bp Feature: domain Description: GIIM Note: maturase Location: 58269-58473 bp Feature: domain Description: GIIM Note: maturase Location: 58269-58473 bp Feature: gene Location: 58685-58867 bp Feature: gene Location: 59051-59212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TatC (pfam00902), tatA (PRK14861), RVT-GII, GIIM (pfam08388)

Seq: SKCD01000033.1 (512866 bp)
Overview 1 RT 1: 502732-512386 bp Neighborhood of RT #1 [502732, 512391] DUF642 DUF642 GanB Big_2 Big_2 Big_2 Big_2 Big_2 Big_2 Big_2 F5_F8_type_C FN3 FN3 SLH SLH SLH Tra8 RVT-GII PRK05803 Feature: gene Location: 502732-510405 bp Feature: domain Description: DUF642 Location: 502831-502957 bp Feature: domain Description: DUF642 Location: 502 831-502 957 bp Feature: domain Description: DUF642 Location: 503266-503425 bp Feature: domain Description: DUF642 Location: 5032 66-50342 5 bp Feature: domain Description: GanB Location: 503797-504832 bp Feature: domain Description: GanB Location: 503797-504832 bp Feature: domain Description: Big_2 Location: 505084-505285 bp Feature: domain Description: Big_2 Location: 505084-5052 85 bp Feature: domain Description: Big_2 Location: 505651-505861 bp Feature: domain Description: Big_2 Location: 505651-505861 bp Feature: domain Description: Big_2 Location: 505909-506104 bp Feature: domain Description: Big_2 Location: 505909-506104 bp Feature: domain Description: Big_2 Location: 506266-506422 bp Feature: domain Description: Big_2 Location: 5062 66-50642 2 bp Feature: domain Description: Big_2 Location: 507139-507265 bp Feature: domain Description: Big_2 Location: 507139-5072 65 bp Feature: domain Description: Big_2 Location: 507478-507643 bp Feature: domain Description: Big_2 Location: 507478-507643 bp Feature: domain Description: Big_2 Location: 507946-508156 bp Feature: domain Description: Big_2 Location: 507946-508156 bp Feature: domain Description: F5_F8_type_C Location: 508273-508567 bp Feature: domain Description: F5_F8_type_C Location: 5082 73-508567 bp Feature: domain Description: FN3 Location: 508903-509119 bp Feature: domain Description: FN3 Location: 508903-509119 bp Feature: domain Description: FN3 Location: 509461-509680 bp Feature: domain Description: FN3 Location: 509461-509680 bp Feature: domain Description: SLH Location: 509860-509983 bp Feature: domain Description: SLH Location: 509860-509983 bp Feature: domain Description: SLH Location: 510040-510169 bp Feature: domain Description: SLH Location: 510040-510169 bp Feature: domain Description: SLH Location: 510226-510352 bp Feature: domain Description: SLH Location: 5102 2 6-510352 bp Feature: gene Location: 510563-511066 bp Feature: domain Description: Tra8 Location: 510641-511058 bp Feature: domain Description: Tra8 Location: 510641-511058 bp Feature: gene Location: 511193-511528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511223-511523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5112 2 3-51152 3 bp Feature: gene Location: 511544-511711 bp Feature: gene Location: 511858-512391 bp Feature: domain Description: PRK05803 Location: 511879-512386 bp Feature: domain Description: PRK05803 Location: 511879-512 386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF642 (pfam04862), GanB (COG3867), Big_2 (pfam02368), F5_F8_type_C (pfam00754), FN3 (smart00060), SLH (pfam00395), Tra8 (COG2826), RVT-GII, PRK05803 (RNA polymerase sporulation sigma factor SigK)

Seq: SKCD01000005.1 (185492 bp)
Overview 1 RT 1: 3000-12674 bp Neighborhood of RT #1 [3000, 12674] VCBS VCBS VCBS VCBS VCBS VCBS VCBS SLH SLH SLH RVT-UG6 Feature: gene Location: 3000-6083 bp Feature: domain Description: VCBS Location: 3006-3186 bp Feature: domain Description: VCBS Location: 3 006-3 186 bp Feature: domain Description: VCBS Location: 3303-3513 bp Feature: domain Description: VCBS Location: 3 3 03 -3 513 bp Feature: domain Description: VCBS Location: 3534-3666 bp Feature: domain Description: VCBS Location: 3 53 4-3 666 bp Feature: domain Description: VCBS Location: 3801-3978 bp Feature: domain Description: VCBS Location: 3 801-3 978 bp Feature: domain Description: VCBS Location: 4104-4287 bp Feature: domain Description: VCBS Location: 4104-4287 bp Feature: domain Description: VCBS Location: 4404-4590 bp Feature: domain Description: VCBS Location: 4404-4590 bp Feature: domain Description: VCBS Location: 4611-4731 bp Feature: domain Description: VCBS Location: 4611-473 1 bp Feature: domain Description: SLH Location: 5520-5643 bp Feature: domain Description: SLH Location: 5520-5643 bp Feature: domain Description: SLH Location: 5706-5826 bp Feature: domain Description: SLH Location: 5706-5826 bp Feature: domain Description: SLH Location: 5910-6036 bp Feature: domain Description: SLH Location: 5910-603 6 bp Feature: gene Location: 6531-7430 bp Feature: gene Location: 7435-10653 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 8020-8491 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 8020-8491 bp Feature: gene Location: 11060-12109 bp Feature: gene Location: 12228-12674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VCBS (pfam13517), SLH (pfam00395), RVT-UG6