myRT

myRT report for GCA_006546415.1_ASM654641v1

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Seq: VIAJ01000015.1 (142368 bp)
Overview 1 RT 1: 32024-38877 bp Neighborhood of RT #1 [32024, 38894] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32024-32689 bp Feature: domain Description: INT_P4_C Location: 32129-32687 bp Feature: domain Description: INT_P4_C Location: 321 29-32687 bp Feature: gene Location: 32950-33390 bp Feature: domain Description: Integrase_1 Location: 32956-33172 bp Feature: domain Description: Integrase_1 Location: 32956-331 72 bp Feature: gene Location: 33447-35525 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33855-34299 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33855-34299 bp Feature: gene Location: 35525-38134 bp Feature: domain Description: FimD Location: 35582-38123 bp Feature: domain Description: FimD Location: 35582-381 23 bp Feature: gene Location: 38166-38894 bp Feature: domain Description: FimC Location: 38214-38877 bp Feature: domain Description: FimC Location: 3821 4-38877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VIAJ01000040.1 (17190 bp)
Overview 1 RT 1: 6571-11924 bp Neighborhood of RT #1 [6571, 12061] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 6571-7842 bp Feature: domain Description: umuC Location: 6574-7834 bp Feature: domain Description: umuC Location: 6574-7834 bp Feature: gene Location: 7842-8273 bp Feature: domain Description: PRK10276 Location: 7893-8256 bp Feature: domain Description: PRK102 76 Location: 7893-82 56 bp Feature: gene Location: 8680-10167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9085-9775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9085-9775 bp Feature: gene Location: 10416-11387 bp Feature: domain Description: StbA Location: 10419-11364 bp Feature: domain Description: StbA Location: 10419-11364 bp Feature: gene Location: 11390-12061 bp Feature: domain Description: Plasmid_stab_B Location: 11405-11612 bp Feature: domain Description: Plasmid_stab_B Location: 11405-11612 bp Feature: domain Description: Plasmid_stab_B Location: 11717-11924 bp Feature: domain Description: Plasmid_stab_B Location: 11717-1192 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)