myRT

myRT report for GCA_006716445.1_ASM671644v1

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Seq: VFPA01000008.1 (273814 bp)
Overview 1 RT 1: 99563-104156 bp Neighborhood of RT #1 [99563, 104173] nicotinamidase_related MalY RVT-GII GIIM nitrile_beta Feature: gene Location: 99563-100198 bp Feature: domain Description: nicotinamidase_related Location: 99584-100058 bp Feature: domain Description: nicotinamidase_related Location: 99584-1 00058 bp Feature: gene Location: 100240-101457 bp Feature: domain Description: MalY Location: 100279-101440 bp Feature: domain Description: MalY Location: 1 00279-1 01 440 bp Feature: gene Location: 101731-103125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101995-102694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 995-1 02694 bp Feature: domain Description: GIIM Note: maturase Location: 102766-102994 bp Feature: domain Description: GIIM Note: maturase Location: 1 02766-1 02994 bp Feature: gene Location: 103384-103557 bp Feature: gene Location: 103943-104173 bp Feature: domain Description: nitrile_beta Location: 103946-104156 bp Feature: domain Description: nitrile_beta Location: 1 03946-1 041 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nicotinamidase_related (cd01014), MalY (COG1168), RVT-GII, GIIM (pfam08388), nitrile_beta (TIGR03888)

Seq: VFPA01000007.1 (349319 bp)
Overview 1 RT 1: 36644-43091 bp Neighborhood of RT #1 [36644, 43594] PRK06197 RVT-GII GIIM SEC-C Feature: gene Location: 36644-37579 bp Feature: domain Description: PRK06197 Location: 36653-37550 bp Feature: domain Description: PRK06197 Location: 36653-37550 bp Feature: gene Location: 37907-38080 bp Feature: gene Location: 38339-39733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38603-39302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38603-39302 bp Feature: domain Description: GIIM Note: maturase Location: 39374-39602 bp Feature: domain Description: GIIM Note: maturase Location: 39374-39602 bp Feature: gene Location: 40901-41701 bp Feature: gene Location: 41717-43594 bp Feature: domain Description: SEC-C Location: 43043-43091 bp Feature: domain Description: SEC-C Location: 43043-43091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06197 (short chain dehydrogenase; Provisional), RVT-GII, GIIM (pfam08388), SEC-C (pfam02810)

Seq: VFPA01000002.1 (1566035 bp)
Overview 1 RT 1: 476428-478395 bp 2 RT 2: 1051686-1056747 bp 3 RT 3: 1447750-1453998 bp Neighborhood of RT #1 [476428, 478475] RVT-GII DDE_3 HTH_28 HTH_33 Neighborhood of RT #2 [1051686, 1056899] RVT-GII GIIM FadR RraA_family Neighborhood of RT #3 [1447750, 1453998] GH43_62_32_68_117_130-like APH RVT-GII GIIM DUF222 Feature: gene Location: 476428-476565 bp Feature: gene Location: 476583-476801 bp Feature: gene Location: 477151-477405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477205-477286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477205-477286 bp Feature: gene Location: 477493-478113 bp Feature: domain Description: DDE_3 Location: 477553-478003 bp Feature: domain Description: DDE_3 Location: 477553 -478003 bp Feature: gene Location: 478023-478475 bp Feature: domain Description: HTH_28 Location: 478029-478128 bp Feature: domain Description: HTH_28 Location: 478029-478128 bp Feature: domain Description: HTH_33 Location: 478224-478395 bp Feature: domain Description: HTH_3 3 Location: 478224-4783 95 bp Feature: gene Location: 1051686-1052570 bp Feature: gene Location: 1053220-1053393 bp Feature: gene Location: 1053652-1055046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053916-1054615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053 916-1054615 bp Feature: domain Description: GIIM Note: maturase Location: 1054687-1054915 bp Feature: domain Description: GIIM Note: maturase Location: 1054687-1054915 bp Feature: gene Location: 1055282-1055995 bp Feature: domain Description: FadR Location: 1055306-1055951 bp Feature: domain Description: FadR Location: 10553 06-1055951 bp Feature: gene Location: 1056204-1056899 bp Feature: domain Description: RraA_family Location: 1056285-1056747 bp Feature: domain Description: RraA_family Location: 1056285-1056747 bp Feature: gene Location: 1447750-1448823 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1447864-1448395 bp Feature: domain Description: GH43 _62_3 2_68_117_13 0-like Location: 1447864-14483 95 bp Feature: gene Location: 1449101-1450015 bp Feature: domain Description: APH Location: 1449191-1449851 bp Feature: domain Description: APH Location: 1449191-1449851 bp Feature: gene Location: 1450346-1451791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1450691-1451372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1450691-14513 72 bp Feature: domain Description: GIIM Note: maturase Location: 1451444-1451663 bp Feature: domain Description: GIIM Note: maturase Location: 1451444-1451663 bp Feature: gene Location: 1452303-1453559 bp Feature: domain Description: DUF222 Location: 1452408-1453341 bp Feature: domain Description: DUF222 Location: 1452408-1453 3 41 bp Feature: gene Location: 1453711-1453998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358), HTH_28 (pfam13518), HTH_33 (pfam13592), GIIM (pfam08388), FadR (COG2186), RraA_family (cd16841), GH43_62_32_68_117_130-like (cd08994), APH (pfam01636), DUF222 (pfam02720)

Seq: VFPA01000001.1 (3339524 bp)
Overview 1 RT 1: 160180-165226 bp 2 RT 2: 1327310-1331867 bp Neighborhood of RT #1 [160180, 165306] COG5659 DDE_5 RVT-GII GIIM RVT-GII Bac_luciferase Bac_luciferase Glyoxalase_3 Neighborhood of RT #2 [1327310, 1331875] YdfG AAA_33 RVT-GII GIIM PRK10858 Feature: gene Location: 160180-160749 bp Feature: domain Description: COG5659 Location: 160345-160558 bp Feature: domain Description: COG5659 Location: 16034 5-160558 bp Feature: gene Location: 160771-161478 bp Feature: domain Description: DDE_5 Location: 160846-161470 bp Feature: domain Description: DDE_5 Location: 16084 6-1614 70 bp Feature: gene Location: 161738-162490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161741-162077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16174 1-162077 bp Feature: domain Description: GIIM Note: maturase Location: 162158-162368 bp Feature: domain Description: GIIM Note: maturase Location: 162158-162368 bp Feature: gene Location: 162494-163099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162812-163097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162812-163097 bp Feature: gene Location: 163691-164668 bp Feature: domain Description: Bac_luciferase Location: 163751-164471 bp Feature: domain Description: Bac_luciferase Location: 163751-164 4 71 bp Feature: domain Description: Bac_luciferase Location: 164495-164579 bp Feature: domain Description: Bac_luciferase Location: 164 4 95-164 579 bp Feature: gene Location: 164686-165306 bp Feature: domain Description: Glyoxalase_3 Location: 164704-165226 bp Feature: domain Description: Glyoxalase_3 Location: 164 704 -165226 bp Feature: gene Location: 1327310-1328092 bp Feature: domain Description: YdfG Location: 1327364-1328087 bp Feature: domain Description: YdfG Location: 1327364 -1328087 bp Feature: gene Location: 1328102-1328761 bp Feature: domain Description: AAA_33 Location: 1328201-1328555 bp Feature: domain Description: AAA_33 Location: 1328201-1328555 bp Feature: gene Location: 1329055-1330449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1329319-1330018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1329319-1330018 bp Feature: domain Description: GIIM Note: maturase Location: 1330090-1330318 bp Feature: domain Description: GIIM Note: maturase Location: 1330090-1330318 bp Feature: gene Location: 1330708-1330881 bp Feature: gene Location: 1331537-1331875 bp Feature: domain Description: PRK10858 Location: 1331549-1331867 bp Feature: domain Description: PRK10858 Location: 133154 9-1331867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), Bac_luciferase (pfam00296), Glyoxalase_3 (pfam13468), YdfG (COG4221), AAA_33 (pfam13671), PRK10858 (nitrogen regulatory protein P-II)

Seq: VFPA01000003.1 (1442499 bp)
Overview 1 RT 1: 509228-514361 bp Neighborhood of RT #1 [509228, 514372] GalT GalK RVT-GII GIIM PaiB Feature: gene Location: 509228-510301 bp Feature: domain Description: GalT Location: 509333-510293 bp Feature: domain Description: GalT Location: 5 09333-5 10293 bp Feature: gene Location: 510298-511428 bp Feature: domain Description: GalK Location: 510307-511420 bp Feature: domain Description: GalK Location: 5 10307-5 11420 bp Feature: gene Location: 511601-512995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511865-512564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 11865 -5 125 64 bp Feature: domain Description: GIIM Note: maturase Location: 512636-512864 bp Feature: domain Description: GIIM Note: maturase Location: 5 12636-5 12864 bp Feature: gene Location: 513254-513427 bp Feature: gene Location: 513749-514372 bp Feature: domain Description: PaiB Location: 513752-514361 bp Feature: domain Description: PaiB Location: 5 1375 2-5 14361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GalT (COG1085), GalK (COG0153), RVT-GII, GIIM (pfam08388), PaiB (COG2808)