myRT

myRT report for GCA_006788735.1_ASM678873v1

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Seq: VFXB01000003.1 (103568 bp)
Overview 1 RT 1: 18357-21539 bp Neighborhood of RT #1 [18357, 21539] RVT-UG4 Feature: gene Location: 18357-19238 bp Feature: gene Location: 19394-19561 bp Feature: gene Location: 19667-20314 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19850-20078 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 9850-20078 bp Feature: gene Location: 20478-21029 bp Feature: gene Location: 21042-21539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: VFXB01000002.1 (131369 bp)
Overview 1 RT 1: 74495-77983 bp 2 RT 2: 124441-128630 bp Neighborhood of RT #1 [74495, 77983] PRK15211 RVT-UG4 Neighborhood of RT #2 [124441, 128755] FimC RVT-GII GIIM InsQ Feature: gene Location: 74495-75184 bp Feature: domain Description: PRK15211 Location: 74501-75182 bp Feature: domain Description: PRK152 11 Location: 74501-75182 bp Feature: gene Location: 75199-75777 bp Feature: gene Location: 75937-76773 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 76123-76561 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7612 3-76561 bp Feature: gene Location: 76778-77602 bp Feature: gene Location: 77636-77983 bp Feature: gene Location: 124441-125190 bp Feature: domain Description: FimC Location: 124522-125176 bp Feature: domain Description: FimC Location: 12 452 2 -12 5176 bp Feature: gene Location: 125514-125939 bp Feature: gene Location: 126045-127283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126276-126888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 62 76-12 6888 bp Feature: domain Description: GIIM Note: maturase Location: 126951-127152 bp Feature: domain Description: GIIM Note: maturase Location: 12 6951-12 7152 bp Feature: gene Location: 127354-127575 bp Feature: gene Location: 127889-128755 bp Feature: domain Description: InsQ Location: 127913-128630 bp Feature: domain Description: InsQ Location: 12 7913-12 8630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15211 (fimbrial chaperone), RVT-UG4, FimC (COG3121), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: VFXB01000001.1 (4949214 bp)
Overview 1 RT 1: 3593219-3599617 bp Neighborhood of RT #1 [3593219, 3599617] HTH_XRE RVT-Retrons Feature: gene Location: 3593219-3593545 bp Feature: gene Location: 3593597-3593887 bp Feature: domain Description: HTH_XRE Location: 3593609-3593774 bp Feature: domain Description: HTH_XRE Location: 3 593 609-3 593 774 bp Feature: gene Location: 3593922-3594839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3594018-3594585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 594018-3 594585 bp Feature: gene Location: 3594880-3598731 bp Feature: gene Location: 3598808-3599617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons