myRT

myRT report for GCA_006788745.1_ASM678874v1

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Seq: VFXC01000003.1 (103568 bp)
Overview 1 RT 1: 11702-14110 bp Neighborhood of RT #1 [11702, 14211] RVT-UG4 OmpT Feature: gene Location: 11702-11869 bp Feature: gene Location: 11888-12163 bp Feature: gene Location: 12311-12679 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12314-12467 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 231 4-1 2467 bp Feature: gene Location: 12923-13804 bp Feature: gene Location: 13864-14211 bp Feature: domain Description: OmpT Location: 13990-14110 bp Feature: domain Description: OmpT Location: 1 3990-1 41 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, OmpT (COG4571)

Seq: VFXC01000002.1 (131369 bp)
Overview 1 RT 1: 4103-6295 bp 2 RT 2: 84700-89000 bp Neighborhood of RT #1 [4103, 6295] RVT-UG4 Neighborhood of RT #2 [84700, 89014] InsQ RVT-GII GIIM FimC Feature: gene Location: 4103-4450 bp Feature: gene Location: 4484-5308 bp Feature: gene Location: 5313-5885 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5319-5673 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5319-5673 bp Feature: gene Location: 5886-6131 bp Feature: gene Location: 6140-6295 bp Feature: gene Location: 84700-85566 bp Feature: domain Description: InsQ Location: 84724-85441 bp Feature: domain Description: InsQ Location: 8472 4-85441 bp Feature: gene Location: 85880-86101 bp Feature: gene Location: 86172-87410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86403-87015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86403-87015 bp Feature: domain Description: GIIM Note: maturase Location: 87078-87279 bp Feature: domain Description: GIIM Note: maturase Location: 87078-872 79 bp Feature: gene Location: 87516-87941 bp Feature: gene Location: 88265-89014 bp Feature: domain Description: FimC Location: 88346-89000 bp Feature: domain Description: FimC Location: 88346-89000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsQ (COG0675), RVT-GII, GIIM (pfam08388), FimC (COG3121)

Seq: VFXC01000001.1 (4949206 bp)
Overview 1 RT 1: 1519794-1526192 bp Neighborhood of RT #1 [1519794, 1526192] HTH_XRE RVT-Retrons Feature: gene Location: 1519794-1520120 bp Feature: gene Location: 1520172-1520462 bp Feature: domain Description: HTH_XRE Location: 1520184-1520349 bp Feature: domain Description: HTH_XRE Location: 1520184-15203 49 bp Feature: gene Location: 1520497-1521414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1520593-1521160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1520593 -1521160 bp Feature: gene Location: 1521455-1525306 bp Feature: gene Location: 1525383-1526192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons