myRT

myRT report for GCA_006788775.1_ASM678877v1

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Seq: VFXE01000001.1 (4949205 bp)
Overview 1 RT 1: 1378789-1385100 bp Neighborhood of RT #1 [1378789, 1385100] RVT-Retrons HTH_XRE Feature: gene Location: 1378789-1379598 bp Feature: gene Location: 1379675-1383526 bp Feature: gene Location: 1383567-1384484 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1383663-1384230 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 383663-1 384230 bp Feature: gene Location: 1384519-1384809 bp Feature: domain Description: HTH_XRE Location: 1384531-1384696 bp Feature: domain Description: HTH_XRE Location: 1 384531 -1 384696 bp Feature: gene Location: 1384861-1385100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: VFXE01000003.1 (103568 bp)
Overview 1 RT 1: 39854-42262 bp Neighborhood of RT #1 [39854, 42363] RVT-UG4 OmpT Feature: gene Location: 39854-40021 bp Feature: gene Location: 40040-40315 bp Feature: gene Location: 40463-40831 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40466-40619 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40466-40619 bp Feature: gene Location: 41075-41956 bp Feature: gene Location: 42016-42363 bp Feature: domain Description: OmpT Location: 42142-42262 bp Feature: domain Description: OmpT Location: 42 142 -42 2 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, OmpT (COG4571)

Seq: VFXE01000002.1 (131369 bp)
Overview 1 RT 1: 50838-54326 bp 2 RT 2: 100784-104973 bp Neighborhood of RT #1 [50838, 54326] PRK15211 RVT-UG4 Neighborhood of RT #2 [100784, 105098] FimC RVT-GII GIIM InsQ Feature: gene Location: 50838-51527 bp Feature: domain Description: PRK15211 Location: 50844-51525 bp Feature: domain Description: PRK15211 Location: 50844-51525 bp Feature: gene Location: 51542-52120 bp Feature: gene Location: 52280-53116 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52466-52904 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52466-52904 bp Feature: gene Location: 53121-53945 bp Feature: gene Location: 53979-54326 bp Feature: gene Location: 100784-101533 bp Feature: domain Description: FimC Location: 100865-101519 bp Feature: domain Description: FimC Location: 100865-101519 bp Feature: gene Location: 101857-102282 bp Feature: gene Location: 102388-103626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102619-103231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102619-103 23 1 bp Feature: domain Description: GIIM Note: maturase Location: 103294-103495 bp Feature: domain Description: GIIM Note: maturase Location: 103 294-103 495 bp Feature: gene Location: 103697-103918 bp Feature: gene Location: 104232-105098 bp Feature: domain Description: InsQ Location: 104256-104973 bp Feature: domain Description: InsQ Location: 104256-104973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15211 (fimbrial chaperone), RVT-UG4, FimC (COG3121), RVT-GII, GIIM (pfam08388), InsQ (COG0675)