myRT

myRT report for GCA_006788925.1_ASM678892v1

Download annotations/find similar RTs

Seq: VHIE01000002.1 (4415115 bp)
Overview 1 RT 1: 53567-57539 bp 2 RT 2: 260576-269448 bp 3 RT 3: 511723-516293 bp 4 RT 4: 1049839-1056153 bp 5 RT 5: 1067822-1075539 bp 6 RT 6: 1115851-1121767 bp 7 RT 7: 1135095-1144168 bp 8 RT 8: 1674678-1681865 bp 9 RT 9: 2293546-2299921 bp Neighborhood of RT #1 [53567, 57539] RVT-UG28 Neighborhood of RT #2 [260576, 269447] SPOR sulfatase_like RVT-GII GIIM DUF820 AAA-ATPase_like Neighborhood of RT #3 [511723, 516304] COG2331 PLN02599 RVT-GII GIIM COG2928 Neighborhood of RT #4 [1049839, 1056356] BaeS COG4567 RVT-GII GIIM DUF2024 MarR Neighborhood of RT #5 [1067822, 1075553] CBS_pair_bac CspC RVT-GII GIIM Kelch Kelch_6 Ggt Neighborhood of RT #6 [1115851, 1121805] COG4655 DUF3613 RVT-GII GIIM TPR TPR_2 TadC Neighborhood of RT #7 [1135095, 1144176] PRK09282 SUA5 RVT-GII GIIM PRK05632 tolC Neighborhood of RT #8 [1674678, 1681876] PilN PilM_2 RVT-GII GIIM PRK12483 PRK00702 Neighborhood of RT #9 [2293546, 2299921] PRK09185 FixC RVT-GII GIIM AcpP Feature: gene Location: 53567-54043 bp Feature: gene Location: 54037-54537 bp Feature: gene Location: 54640-56136 bp Ori: TQO24472.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 54925-55564 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 54925-55564 bp Feature: gene Location: 56450-56626 bp Feature: gene Location: 56628-57539 bp Feature: gene Location: 260576-262258 bp Ori: TQO24627.1 Feature: domain Description: SPOR Location: 262028-262229 bp Feature: domain Description: SPOR Location: 262028-262229 bp Feature: gene Location: 262862-264898 bp Ori: TQO24628.1 Feature: domain Description: sulfatase_like Location: 263750-264602 bp Feature: domain Description: sulfatase_like Location: 263750-264602 bp Feature: gene Location: 265976-267289 bp Ori: TQO24629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266207-266828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266207-266828 bp Feature: domain Description: GIIM Note: maturase Location: 266873-267092 bp Feature: domain Description: GIIM Note: maturase Location: 266873-267092 bp Feature: gene Location: 267805-268407 bp Ori: TQO24630.1 Feature: domain Description: DUF820 Location: 267880-268291 bp Feature: domain Description: DUF820 Location: 267880-268291 bp Feature: gene Location: 269298-269447 bp Feature: domain Description: AAA-ATPase_like Location: 269319-269448 bp Feature: domain Description: AAA-ATPase_like Location: 26931 9-269448 bp Feature: gene Location: 511723-511992 bp Ori: TQO24845.1 Feature: domain Description: COG2331 Location: 511726-511942 bp Feature: domain Description: COG2331 Location: 51 1 726-51 1 942 bp Feature: gene Location: 512094-513131 bp Ori: TQO24846.1 Feature: domain Description: PLN02599 Location: 512100-513123 bp Feature: domain Description: PLN02599 Location: 51 21 00-51 31 23 bp Feature: gene Location: 513941-515254 bp Ori: TQO24847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514172-514793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 41 72-51 4793 bp Feature: domain Description: GIIM Note: maturase Location: 514838-515057 bp Feature: domain Description: GIIM Note: maturase Location: 51 4838-51 5057 bp Feature: gene Location: 515450-515677 bp Feature: gene Location: 515714-516304 bp Ori: TQO24849.1 Feature: domain Description: COG2928 Location: 515729-516293 bp Feature: domain Description: COG2928 Location: 51 5729-51 6293 bp Feature: gene Location: 1049839-1051257 bp Ori: TQO25303.1 Feature: domain Description: BaeS Location: 1050481-1051231 bp Feature: domain Description: BaeS Location: 1 050481 -1 051 231 bp Feature: gene Location: 1051235-1051783 bp Ori: TQO25304.1 Feature: domain Description: COG4567 Location: 1051247-1051778 bp Feature: domain Description: COG4567 Location: 1 051 247-1 051 778 bp Feature: gene Location: 1052770-1054077 bp Ori: TQO25305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053001-1053619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 053001 -1 05361 9 bp Feature: domain Description: GIIM Note: maturase Location: 1053664-1053868 bp Feature: domain Description: GIIM Note: maturase Location: 1 053664-1 053868 bp Feature: gene Location: 1055337-1055600 bp Ori: TQO25306.1 Feature: domain Description: DUF2024 Location: 1055352-1055583 bp Feature: domain Description: DUF2024 Location: 1 055352-1 055583 bp Feature: gene Location: 1055796-1056356 bp Ori: TQO25307.1 Feature: domain Description: MarR Location: 1055871-1056153 bp Feature: domain Description: MarR Location: 1 055871 -1 0561 53 bp Feature: gene Location: 1067822-1068229 bp Ori: TQO25317.1 Feature: domain Description: CBS_pair_bac Location: 1067852-1068206 bp Feature: domain Description: CBS_pair_bac Location: 1 067852-1 068206 bp Feature: gene Location: 1068378-1068581 bp Ori: TQO25318.1 Feature: domain Description: CspC Location: 1068381-1068576 bp Feature: domain Description: CspC Location: 1 068381 -1 068576 bp Feature: gene Location: 1069260-1070573 bp Ori: TQO25319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1069491-1070112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 069491 -1 0701 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 1070157-1070376 bp Feature: domain Description: GIIM Note: maturase Location: 1 0701 57-1 070376 bp Feature: gene Location: 1071322-1073247 bp Ori: TQO25320.1 Feature: domain Description: Kelch Location: 1072312-1072741 bp Feature: domain Description: Kelch Location: 1 07231 2-1 072741 bp Feature: domain Description: Kelch_6 Location: 1072786-1072930 bp Feature: domain Description: Kelch_6 Location: 1 072786-1 072930 bp Feature: gene Location: 1073856-1075553 bp Ori: TQO25321.1 Feature: domain Description: Ggt Location: 1073943-1075539 bp Feature: domain Description: Ggt Location: 1 073943-1 075539 bp Feature: gene Location: 1115851-1117515 bp Ori: TQO25364.1 Feature: domain Description: COG4655 Location: 1115863-1117513 bp Feature: domain Description: COG4655 Location: 1 1 1 5863-1 1 1 751 3 bp Feature: gene Location: 1117658-1117936 bp Ori: TQO25365.1 Feature: domain Description: DUF3613 Location: 1117748-1117904 bp Feature: domain Description: DUF361 3 Location: 1 1 1 7748-1 1 1 7904 bp Feature: gene Location: 1118147-1119454 bp Ori: TQO25366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118378-1118996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 8378-1 1 1 8996 bp Feature: domain Description: GIIM Note: maturase Location: 1119041-1119245 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 9041 -1 1 1 9245 bp Feature: gene Location: 1120173-1120886 bp Ori: TQO25367.1 Feature: domain Description: TPR Location: 1120407-1120608 bp Feature: domain Description: TPR Location: 1 1 20407-1 1 20608 bp Feature: domain Description: TPR_2 Location: 1120641-1120722 bp Feature: domain Description: TPR_2 Location: 1 1 20641 -1 1 20722 bp Feature: gene Location: 1120873-1121805 bp Ori: TQO25368.1 Feature: domain Description: TadC Location: 1121200-1121767 bp Feature: domain Description: TadC Location: 1 1 21 200-1 1 21 767 bp Feature: gene Location: 1135095-1136921 bp Ori: TQO25380.1 Feature: domain Description: PRK09282 Location: 1135101-1136913 bp Feature: domain Description: PRK09282 Location: 1 1 351 01 -1 1 3691 3 bp Feature: gene Location: 1136926-1137912 bp Ori: TQO25381.1 Feature: domain Description: SUA5 Location: 1136947-1137541 bp Feature: domain Description: SUA5 Location: 1 1 36947-1 1 37541 bp Feature: gene Location: 1138508-1139821 bp Ori: TQO25382.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138739-1139360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 38739-1 1 39360 bp Feature: domain Description: GIIM Note: maturase Location: 1139405-1139624 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 39405-1 1 39624 bp Feature: gene Location: 1140685-1142799 bp Ori: TQO25383.1 Feature: domain Description: PRK05632 Location: 1140700-1142773 bp Feature: domain Description: PRK05632 Location: 1 1 40700-1 1 42773 bp Feature: gene Location: 1142818-1144176 bp Ori: TQO25384.1 Feature: domain Description: tolC Location: 1142854-1144168 bp Feature: domain Description: tolC Location: 1 1 42854-1 1 441 68 bp Feature: gene Location: 1674678-1675235 bp Ori: TQO25832.1 Feature: domain Description: PilN Location: 1674681-1675188 bp Feature: domain Description: PilN Location: 1 674681 -1 6751 88 bp Feature: gene Location: 1675235-1676296 bp Ori: TQO25833.1 Feature: domain Description: PilM_2 Location: 1675274-1676291 bp Feature: domain Description: PilM_2 Location: 1 675274-1 676291 bp Feature: gene Location: 1677269-1678582 bp Ori: TQO25834.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1677500-1678121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 677500-1 6781 21 bp Feature: domain Description: GIIM Note: maturase Location: 1678166-1678385 bp Feature: domain Description: GIIM Note: maturase Location: 1 6781 66-1 678385 bp Feature: gene Location: 1679584-1681185 bp Ori: TQO25835.1 Feature: domain Description: PRK12483 Location: 1679632-1681141 bp Feature: domain Description: PRK1 2483 Location: 1 679632-1 681 1 41 bp Feature: gene Location: 1681223-1681876 bp Ori: TQO25836.1 Feature: domain Description: PRK00702 Location: 1681226-1681865 bp Feature: domain Description: PRK00702 Location: 1 681 226-1 681 865 bp Feature: gene Location: 2293546-2294727 bp Ori: TQO26352.1 Feature: domain Description: PRK09185 Location: 2293552-2294722 bp Feature: domain Description: PRK091 85 Location: 2293552-2294722 bp Feature: gene Location: 2294732-2295967 bp Ori: TQO26353.1 Feature: domain Description: FixC Location: 2294756-2295908 bp Feature: domain Description: FixC Location: 2294756-2295908 bp Feature: gene Location: 2296142-2297449 bp Ori: TQO26354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296373-2296991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296373-2296991 bp Feature: domain Description: GIIM Note: maturase Location: 2297036-2297240 bp Feature: domain Description: GIIM Note: maturase Location: 2297036-2297240 bp Feature: gene Location: 2298354-2298593 bp Ori: TQO26355.1 Feature: domain Description: AcpP Location: 2298360-2298579 bp Feature: domain Description: AcpP Location: 2298360-2298579 bp Feature: gene Location: 2298590-2299921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, SPOR (pfam05036), sulfatase_like (cd16156), RVT-GII, GIIM (pfam08388), DUF820, AAA-ATPase_like (pfam09820), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), PLN02599 (dihydroorotase), COG2928 (Uncharacterized membrane protein )
BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), DUF2024 (pfam09630), MarR (pfam01047), CBS_pair_bac (cd17788), CspC (COG1278), Kelch (smart00612), Kelch_6 (pfam13964), Ggt (COG0405), COG4655 (Uncharacterized membrane protein )
DUF3613 (pfam12266), TPR (smart00028), TPR_2 (pfam07719), TadC (COG2064), PRK09282 (pyruvate carboxylase subunit B; Validated), SUA5 (pfam03481), PRK05632 (phosphate acetyltransferase; Reviewed), tolC (PRK09465), PilN (pfam05137), PilM_2 (pfam11104)
PRK12483 (threonine dehydratase; Reviewed), PRK00702 (ribose-5-phosphate isomerase RpiA), PRK09185 (beta-ketoacyl-ACP synthase), FixC (COG0644), AcpP (COG0236)