myRT

myRT report for GCA_006802155.1_ASM680215v1

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Seq: VIOO01000139.1 (403145 bp)
Overview 1 RT 1: 101483-106204 bp Neighborhood of RT #1 [101483, 106248] PAAR_1 DUF3265 RVT_N RVT-GII GIIM Cas6_I-F Feature: gene Location: 101483-102595 bp Ori: TQO96894.1 Feature: domain Description: PAAR_1 Location: 101498-101765 bp Feature: domain Description: PAAR_1 Location: 1 01 498-1 01 765 bp Feature: gene Location: 102719-102829 bp Ori: TQO97155.1 Feature: domain Description: DUF3265 Location: 102749-102827 bp Feature: domain Description: DUF3265 Location: 1 02749-1 02827 bp Feature: gene Location: 103709-105104 bp Gene: ltrA Feature: domain Description: RVT_N Location: 103757-104000 bp Feature: domain Description: RVT_N Location: 1 03757-1 04000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104045-104672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04045-1 04672 bp Feature: domain Description: GIIM Note: maturase Location: 104735-104870 bp Feature: domain Description: GIIM Note: maturase Location: 1 04735-1 04870 bp Feature: gene Location: 105020-105217 bp Feature: gene Location: 105610-106248 bp Ori: TQO96895.1 Gene: cas6f Feature: domain Description: Cas6_I-F Location: 105622-106204 bp Feature: domain Description: Cas6_I-F Location: 1 05622-1 06204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_1 (cd14737), DUF3265 (pfam11665), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Cas6_I-F (cl09835)

Seq: VIOO01000136.1 (8390 bp)
Overview 1 RT 1: 4681-7869 bp Neighborhood of RT #1 [4681, 7869] DUF645 RVT-UG12 HEPN_RiboL-PSP Feature: gene Location: 4681-4896 bp Feature: gene Location: 4933-5038 bp Feature: domain Description: DUF645 Location: 4936-5002 bp Feature: domain Description: DUF645 Location: 4936-5002 bp Feature: gene Location: 5188-6801 bp Ori: TQO97208.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5587-6031 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5587-6031 bp Feature: gene Location: 6947-7699 bp Ori: TQO97209.1 Feature: domain Description: HEPN_RiboL-PSP Location: 7154-7682 bp Feature: domain Description: HEPN_RiboL-PSP Location: 7154-7682 bp Feature: gene Location: 7756-7869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF645 (pfam04875), RVT-UG12, HEPN_RiboL-PSP (pfam18735)

Seq: VIOO01000013.1 (157353 bp)
Overview 1 RT 1: 20755-25936 bp Neighborhood of RT #1 [20755, 26106] Tar CZB tdh RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 20755-21840 bp Ori: TQP03879.1 Feature: domain Description: Tar Location: 20953-21475 bp Feature: domain Description: Tar Location: 20953 -21475 bp Feature: domain Description: CZB Location: 21529-21721 bp Feature: domain Description: CZB Location: 21529-21721 bp Feature: gene Location: 22040-22207 bp Ori: TQP03880.1 Feature: domain Description: tdh Location: 22049-22205 bp Feature: domain Description: tdh Location: 22049-22205 bp Feature: gene Location: 22784-23728 bp Ori: TQP03881.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22883-23480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22883 -23 480 bp Feature: gene Location: 23718-25346 bp Ori: TQP03882.1 Feature: domain Description: COG3950 Location: 23904-25284 bp Feature: domain Description: COG3 950 Location: 23 904-25284 bp Feature: gene Location: 25303-26106 bp Ori: TQP03883.1 Feature: domain Description: TIGR02646 Location: 25408-25936 bp Feature: domain Description: TIGR02646 Location: 25408-2593 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CZB (pfam13682), tdh (TIGR00692), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)