myRT

myRT report for GCA_006803005.1_ASM680300v1

Download annotations/find similar RTs

Seq: VIQB01000104.1 (6485 bp)
Overview 1 RT 1: 1476-5210 bp Neighborhood of RT #1 [1476, 5248] PIN_GNAT-like PIN_GNAT-like RVT-UG7 CopG_antitoxin Feature: gene Location: 1476-2645 bp Ori: TQQ38409.1 Feature: domain Description: PIN_GNAT-like Location: 1977-2055 bp Feature: domain Description: PIN_GNAT-like Location: 1 977-2055 bp Feature: domain Description: PIN_GNAT-like Location: 2487-2592 bp Feature: domain Description: PIN_GNAT-like Location: 2487-2592 bp Feature: gene Location: 2780-2951 bp Feature: gene Location: 3289-4833 bp Ori: TQQ38410.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3673-4093 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3673-4093 bp Feature: gene Location: 4888-4983 bp Feature: gene Location: 5003-5248 bp Ori: TQQ38411.1 Feature: domain Description: CopG_antitoxin Location: 5096-5210 bp Feature: domain Description: CopG_antitoxin Location: 5096-521 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_GNAT-like (cd18700), RVT-UG7, CopG_antitoxin (pfam12441)

Seq: VIQB01000005.1 (42610 bp)
Overview 1 RT 1: 39359-41793 bp Neighborhood of RT #1 [39359, 42323] SLATT_5 RVT-UG17 Feature: gene Location: 39359-39841 bp Feature: gene Location: 40423-40989 bp Ori: TQQ45968.1 Feature: domain Description: SLATT_5 Location: 40432-40963 bp Feature: domain Description: SLATT_5 Location: 40432 -40963 bp Feature: gene Location: 40989-42323 bp Ori: TQQ45969.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 41211-41793 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 412 11-41793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: VIQB01000018.1 (140938 bp)
Overview 1 RT 1: 70344-74416 bp Neighborhood of RT #1 [70344, 75246] Cas6_I-F RVT_N RVT-GII GIIM DUF3265 PAAR_1 Feature: gene Location: 70344-70982 bp Ori: TQQ45006.1 Gene: cas6f Feature: domain Description: Cas6_I-F Location: 70356-70938 bp Feature: domain Description: Cas6_I-F Location: 703 56-7093 8 bp Feature: gene Location: 71435-71632 bp Feature: gene Location: 71548-73020 bp Ori: TQQ45007.1 Gene: ltrA Feature: domain Description: RVT_N Location: 71596-71839 bp Feature: domain Description: RVT_N Location: 71596-7183 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71884-72511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71884-72511 bp Feature: domain Description: GIIM Note: maturase Location: 72574-72796 bp Feature: domain Description: GIIM Note: maturase Location: 72574-72796 bp Feature: gene Location: 73900-74010 bp Ori: TQQ45073.1 Feature: domain Description: DUF3265 Location: 73930-74008 bp Feature: domain Description: DUF3 265 Location: 73 93 0-74008 bp Feature: gene Location: 74134-75246 bp Ori: TQQ45008.1 Feature: domain Description: PAAR_1 Location: 74149-74416 bp Feature: domain Description: PAAR_1 Location: 74149-74416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6_I-F (cl09835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3265 (pfam11665), PAAR_1 (cd14737)