myRT

myRT report for GCA_007002785.1_ASM700278v1

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Seq: SGOC01000001.1 (958907 bp)
Overview 1 RT 1: 2299-7934 bp Neighborhood of RT #1 [2299, 7975] HipA HTH_XRE RVT-Retrons Trypsin_2 PRK01229 Nitroreductase Feature: gene Location: 2299-3663 bp Ori: TRB25562.1 Feature: domain Description: HipA Location: 2422-3454 bp Feature: domain Description: HipA Location: 2422-3454 bp Feature: gene Location: 3651-3968 bp Ori: TRB25563.1 Feature: domain Description: HTH_XRE Location: 3762-3906 bp Feature: domain Description: HTH_XRE Location: 3762-3906 bp Feature: gene Location: 4830-6287 bp Ori: TRB26415.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4851-5448 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4851 -5448 bp Feature: domain Description: Trypsin_2 Location: 5796-6207 bp Feature: domain Description: Trypsin_2 Location: 5796-6207 bp Feature: gene Location: 6527-7300 bp Ori: TRB25564.1 Feature: domain Description: PRK01229 Location: 6710-7223 bp Feature: domain Description: PRK01 229 Location: 671 0-7223 bp Feature: gene Location: 7307-7975 bp Ori: TRB25565.1 Feature: domain Description: Nitroreductase Location: 7433-7934 bp Feature: domain Description: Nitroreductase Location: 7433-7934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA (COG3550), HTH_XRE (smart00530), RVT-Retrons, Trypsin_2 (pfam13365), PRK01229 (N-glycosylase/DNA lyase; Provisional), Nitroreductase (pfam00881)

Seq: SGOC01000022.1 (60458 bp)
Overview 1 RT 1: 2337-5355 bp Neighborhood of RT #1 [2337, 5357] ScpB RVT-GII Rve PBP2_SsuA Feature: gene Location: 2337-3029 bp Ori: TRB16496.1 Feature: domain Description: ScpB Location: 2436-2973 bp Feature: domain Description: ScpB Location: 2 436-2 973 bp Feature: gene Location: 3117-3452 bp Feature: gene Location: 3353-4405 bp Ori: TRB16498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860-4400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860-4400 bp Feature: gene Location: 4392-4958 bp Feature: domain Description: Rve Location: 4395-4941 bp Feature: domain Description: Rve Location: 4395-4941 bp Feature: gene Location: 5013-5357 bp Feature: domain Description: PBP2_SsuA Location: 5112-5355 bp Feature: domain Description: PBP2 _SsuA Location: 5112 -5355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ScpB (COG1386), RVT-GII, Rve (COG3316), PBP2_SsuA (cd13557)

Seq: SGOC01000007.1 (367674 bp)
Overview 1 RT 1: 355680-361805 bp Neighborhood of RT #1 [355680, 362250] NT_2-5OAS_ClassI-CCAase PRK13300 HTH_3 ImmA RVT-UG12 FabG Feature: gene Location: 355680-356624 bp Ori: TRB21525.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 355749-356184 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 3 55749-3 56184 bp Feature: domain Description: PRK13300 Location: 356346-356532 bp Feature: domain Description: PRK13 3 00 Location: 3 563 46-3 5653 2 bp Feature: gene Location: 356798-357853 bp Ori: TRB21526.1 Feature: domain Description: HTH_3 Location: 356816-356978 bp Feature: domain Description: HTH_3 Location: 3 56816-3 56978 bp Feature: domain Description: ImmA Location: 357185-357686 bp Feature: domain Description: ImmA Location: 3 57185-3 57686 bp Feature: gene Location: 358002-359753 bp Ori: TRB21527.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 358362-358806 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3 583 62-3 58806 bp Feature: gene Location: 360383-361114 bp Feature: gene Location: 361508-362250 bp Feature: domain Description: FabG Location: 361511-361805 bp Feature: domain Description: FabG Location: 3 61511-3 61805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_2-5OAS_ClassI-CCAase (cd05400), PRK13300 (CCA tRNA nucleotidyltransferase), HTH_3 (pfam01381), ImmA (COG2856), RVT-UG12, FabG (COG1028)

Seq: SGOC01000034.1 (9244 bp)
Overview 1 RT 1: 2390-8748 bp Neighborhood of RT #1 [2390, 8748] COG4567 RVT-Retrons HTH_XRE Feature: gene Location: 2390-2845 bp Ori: TRB15190.1 Feature: domain Description: COG4567 Location: 2396-2693 bp Feature: domain Description: COG4 567 Location: 2396-2693 bp Feature: gene Location: 2842-5790 bp Feature: gene Location: 6210-7262 bp Ori: TRB15192.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6390-6897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6390-6897 bp Feature: gene Location: 7252-7575 bp Ori: TRB15194.1 Feature: domain Description: HTH_XRE Location: 7288-7450 bp Feature: domain Description: HTH_XRE Location: 7288-74 50 bp Feature: gene Location: 8170-8748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-Retrons, HTH_XRE (smart00530)

Seq: SGOC01000002.1 (949964 bp)
Overview 1 RT 1: 706948-710597 bp Neighborhood of RT #1 [706948, 710602] Crp RVT-GII GIIM Rve Feature: gene Location: 706948-707640 bp Ori: TRB25010.1 Feature: domain Description: Crp Location: 706978-707584 bp Feature: domain Description: Crp Location: 706978-7075 84 bp Feature: gene Location: 708039-708591 bp Feature: gene Location: 708563-709993 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708938-709595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708938-7095 95 bp Feature: domain Description: GIIM Note: maturase Location: 709676-709907 bp Feature: domain Description: GIIM Note: maturase Location: 709676-709907 bp Feature: gene Location: 710052-710204 bp Feature: gene Location: 710354-710602 bp Feature: domain Description: Rve Location: 710381-710597 bp Feature: domain Description: Rve Location: 710381-7105 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Crp (pfam00325), RVT-GII, GIIM (pfam08388), Rve (COG3316)