myRT

myRT report for GCA_007004545.1_ASM700454v1

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Seq: VJOS01000012.1 (1656532 bp)
Overview 1 RT 1: 283457-291829 bp 2 RT 2: 371867-376264 bp 3 RT 3: 512224-521485 bp 4 RT 4: 1385071-1387303 bp Neighborhood of RT #1 [283457, 291829] cyt_nit_nrfC cyt_nit_nrfD RVT_N RVT-GII GIIM RVT-Retrons RVT-Retrons Neighborhood of RT #2 [371867, 376264] DUF3149 INT_C_like_1 RVT-UG11 Dcm Neighborhood of RT #3 [512224, 521490] DEAH_box_HrpB PBP_1b RVT_N RVT-GII GIIM gram_neg_porins Neighborhood of RT #4 [1385071, 1387303] RVT_N RVT-GII Feature: gene Location: 283457-284029 bp Feature: domain Description: cyt_nit_nrfC Location: 283463-284021 bp Feature: domain Description: cyt_nit_nrfC Location: 283463-284021 bp Feature: gene Location: 284026-284994 bp Feature: domain Description: cyt_nit_nrfD Location: 284059-284980 bp Feature: domain Description: cyt_nit_nrfD Location: 284059-284980 bp Feature: gene Location: 285561-287033 bp Feature: domain Description: RVT_N Location: 285609-285852 bp Feature: domain Description: RVT_N Location: 285609-285852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285897-286524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285897-286524 bp Feature: domain Description: GIIM Note: maturase Location: 286581-286809 bp Feature: domain Description: GIIM Note: maturase Location: 286581 -286809 bp Feature: gene Location: 287904-288752 bp Feature: gene Location: 288922-289917 bp Feature: gene Location: 289919-290305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 290021-290279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 290021 -290279 bp Feature: gene Location: 290380-290883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 290383-290611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 290383-29061 1 bp Feature: gene Location: 291144-291272 bp Feature: gene Location: 291377-291829 bp Feature: gene Location: 371867-371995 bp Feature: domain Description: DUF3149 Location: 371879-371993 bp Feature: domain Description: DUF31 49 Location: 371 879-371 993 bp Feature: gene Location: 372809-373126 bp Feature: domain Description: INT_C_like_1 Location: 372818-373124 bp Feature: domain Description: INT_C_like_1 Location: 37281 8-3731 24 bp Feature: gene Location: 373623-374402 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 373755-374205 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 373755-374205 bp Feature: gene Location: 374521-376092 bp Feature: domain Description: Dcm Location: 374527-376087 bp Feature: domain Description: Dcm Location: 374527-376087 bp Feature: gene Location: 376100-376264 bp Feature: gene Location: 512224-514797 bp Feature: domain Description: DEAH_box_HrpB Location: 512236-514780 bp Feature: domain Description: DEAH_box_HrpB Location: 51 2236-51 4780 bp Feature: gene Location: 514852-517245 bp Feature: domain Description: PBP_1b Location: 515023-517183 bp Feature: domain Description: PBP_1 b Location: 51 5023-51 71 83 bp Feature: gene Location: 517772-519244 bp Feature: domain Description: RVT_N Location: 517820-518063 bp Feature: domain Description: RVT_N Location: 51 7820-51 8063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518108-518735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 81 08-51 8735 bp Feature: domain Description: GIIM Note: maturase Location: 518792-519020 bp Feature: domain Description: GIIM Note: maturase Location: 51 8792-51 9020 bp Feature: gene Location: 519793-520101 bp Feature: gene Location: 520282-521490 bp Feature: domain Description: gram_neg_porins Location: 520375-521485 bp Feature: domain Description: gram_neg_porins Location: 520375-521 485 bp Feature: gene Location: 1385071-1385502 bp Feature: gene Location: 1385775-1385987 bp Feature: gene Location: 1386188-1386703 bp Feature: domain Description: RVT_N Location: 1386236-1386479 bp Feature: domain Description: RVT_N Location: 1 386236-1 386479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386524-1386629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 386524-1 386629 bp Feature: gene Location: 1386777-1387046 bp Feature: gene Location: 1387139-1387303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cyt_nit_nrfC (TIGR03149), cyt_nit_nrfD (TIGR03148), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RVT-Retrons, DUF3149 (pfam11346), INT_C_like_1 (cd01184), RVT-UG11, Dcm (COG0270)
DEAH_box_HrpB (TIGR01970), PBP_1b (TIGR02071), gram_neg_porins (cd00342)