myRT

myRT report for GCA_007049795.1_ASM704979v1

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Seq: SCFY01000018.1 (117715 bp)
Overview 1 RT 1: 1779-10516 bp Neighborhood of RT #1 [1779, 10536] ZnF_CHCC DUF3987 RVT-Retrons COG4889 Feature: gene Location: 1779-2156 bp Feature: domain Description: ZnF_CHCC Location: 1845-1947 bp Feature: domain Description: ZnF_CHCC Location: 1 845-1 947 bp Feature: gene Location: 2153-3706 bp Feature: domain Description: DUF3987 Location: 2378-3458 bp Feature: domain Description: DUF3987 Location: 2378-3458 bp Feature: gene Location: 3913-4932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4051-4615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4051 -461 5 bp Feature: gene Location: 5008-5259 bp Feature: gene Location: 5671-10536 bp Feature: domain Description: COG4889 Location: 5677-10516 bp Feature: domain Description: COG4889 Location: 5677-1 051 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnF_CHCC (smart00400), DUF3987 (pfam13148), RVT-Retrons, COG4889 (Predicted helicase )

Seq: SCFY01000017.1 (126518 bp)
Overview 1 RT 1: 66450-72488 bp Neighborhood of RT #1 [66450, 72490] upp UraA RVT-GII GIIM DUF481 DUF481 Feature: gene Location: 66450-67088 bp Feature: domain Description: upp Location: 66462-67074 bp Feature: domain Description: upp Location: 66462 -67074 bp Feature: gene Location: 67090-68352 bp Feature: domain Description: UraA Location: 67117-68332 bp Feature: domain Description: UraA Location: 67117-68332 bp Feature: gene Location: 68433-69758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68694-69309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68694-69309 bp Feature: domain Description: GIIM Note: maturase Location: 69363-69591 bp Feature: domain Description: GIIM Note: maturase Location: 69363-69591 bp Feature: gene Location: 70340-71488 bp Feature: domain Description: DUF481 Location: 70865-71486 bp Feature: domain Description: DUF481 Location: 70865-71486 bp Feature: gene Location: 71498-72490 bp Feature: domain Description: DUF481 Location: 71903-72488 bp Feature: domain Description: DUF481 Location: 71903-72 488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT upp (TIGR01091), UraA (COG2233), RVT-GII, GIIM (pfam08388), DUF481 (pfam04338)

Seq: SCFY01000027.1 (56122 bp)
Overview 1 RT 1: 40575-46878 bp Neighborhood of RT #1 [40575, 46878] RVT-UG8 RVT-UG3 NERD zf-C4_Topoisom Feature: gene Location: 40575-41030 bp Feature: gene Location: 41343-41558 bp Feature: gene Location: 42107-44128 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 42671-43127 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 42671-43 127 bp Feature: gene Location: 44172-45530 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44637-45111 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4463 7-45111 bp Feature: gene Location: 45720-46490 bp Feature: domain Description: NERD Location: 45819-46152 bp Feature: domain Description: NERD Location: 45819-46152 bp Feature: domain Description: zf-C4_Topoisom Location: 46371-46485 bp Feature: domain Description: zf-C4_Topoisom Location: 463 71-46485 bp Feature: gene Location: 46660-46878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, NERD (pfam08378), zf-C4_Topoisom (pfam01396)

Seq: SCFY01000019.1 (90624 bp)
Overview 1 RT 1: 4939-8077 bp Neighborhood of RT #1 [4939, 8077] RVT-GII GIIM PRK05269 Feature: gene Location: 4939-5271 bp Feature: gene Location: 5362-5568 bp Feature: gene Location: 5685-6728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5691-6309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5691-6309 bp Feature: domain Description: GIIM Note: maturase Location: 6366-6576 bp Feature: domain Description: GIIM Note: maturase Location: 6366-6576 bp Feature: gene Location: 6816-7742 bp Feature: domain Description: PRK05269 Location: 6819-7737 bp Feature: domain Description: PRK05269 Location: 6819-7737 bp Feature: gene Location: 7769-8077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK05269 (transaldolase B; Provisional)

Seq: SCFY01000031.1 (50052 bp)
Overview 1 RT 1: 57-1371 bp Neighborhood of RT #1 [57, 1391] RVT-Retrons ParE Feature: gene Location: 57-704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102-672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102-672 bp Feature: gene Location: 767-961 bp Feature: gene Location: 1125-1391 bp Feature: domain Description: ParE Location: 1128-1371 bp Feature: domain Description: ParE Location: 1128-1371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ParE (COG3668)

Seq: SCFY01000001.1 (350517 bp)
Overview 1 RT 1: 32591-36036 bp Neighborhood of RT #1 [32591, 36036] DUF1566 Avd_like RVT-DGRs HTH_17 Feature: gene Location: 32591-33232 bp Feature: domain Description: DUF1566 Location: 32858-33185 bp Feature: domain Description: DUF156 6 Location: 32858-33185 bp Feature: gene Location: 33256-33618 bp Feature: domain Description: Avd_like Location: 33283-33595 bp Feature: domain Description: Avd_like Location: 33283-33595 bp Feature: gene Location: 33582-35009 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34095-34779 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34095-34779 bp Feature: gene Location: 35006-35572 bp Feature: domain Description: HTH_17 Location: 35027-35177 bp Feature: domain Description: HTH_17 Location: 35027-35177 bp Feature: gene Location: 35569-36036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, HTH_17 (pfam12728)

Seq: SCFY01000024.1 (64953 bp)
Overview 1 RT 1: 30646-36495 bp Neighborhood of RT #1 [30646, 36500] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 30646-30897 bp Feature: gene Location: 31278-31763 bp Feature: domain Description: PRK00024 Location: 31281-31713 bp Feature: domain Description: PRK00024 Location: 31281-317 13 bp Feature: gene Location: 32893-34626 bp Feature: domain Description: RVT_N Location: 32953-33196 bp Feature: domain Description: RVT_N Location: 32953-33196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33244-33895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33244-33895 bp Feature: domain Description: GIIM Note: maturase Location: 33970-34201 bp Feature: domain Description: GIIM Note: maturase Location: 3397 0-34201 bp Feature: domain Description: HNHc Note: nucleases Location: 34429-34585 bp Feature: domain Description: HNHc Note: nucleases Location: 34429-34585 bp Feature: gene Location: 34834-36042 bp Feature: domain Description: PRK05579 Location: 34840-36034 bp Feature: domain Description: PRK0557 9 Location: 34840-36034 bp Feature: gene Location: 36045-36500 bp Feature: domain Description: dut Location: 36051-36495 bp Feature: domain Description: dut Location: 36051-36495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)

Seq: SCFY01000015.1 (159902 bp)
Overview 1 RT 1: 152349-156378 bp Neighborhood of RT #1 [152349, 156378] RVT-GII GIIM conj_PilL Feature: gene Location: 152349-152666 bp Feature: gene Location: 152755-153060 bp Feature: gene Location: 153593-154885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153851-154463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1538 51-154463 bp Feature: domain Description: GIIM Note: maturase Location: 154529-154727 bp Feature: domain Description: GIIM Note: maturase Location: 154529-154727 bp Feature: gene Location: 155207-155728 bp Feature: domain Description: conj_PilL Location: 155342-155645 bp Feature: domain Description: conj_PilL Location: 155342-155645 bp Feature: gene Location: 155725-156378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), conj_PilL (TIGR03748)