myRT

myRT report for GCA_007095595.1_ASM709559v1

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Seq: SFBU01000207.1 (20352 bp)
Overview 1 RT 1: 16189-20348 bp Neighborhood of RT #1 [16189, 20352] InsQ Phage_int_SAM_1 INT_C_like_5 RVT-CRISPR Cas_Cas1 Feature: gene Location: 16189-17370 bp Ori: TRT84694.1 Feature: domain Description: InsQ Location: 16195-17311 bp Feature: domain Description: InsQ Location: 1 61 95-1 731 1 bp Feature: gene Location: 17463-18551 bp Ori: TRT84698.1 Feature: domain Description: Phage_int_SAM_1 Location: 17673-17904 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 7673-1 7904 bp Feature: domain Description: INT_C_like_5 Location: 17994-18507 bp Feature: domain Description: INT_C_like_5 Location: 1 7994-1 8507 bp Feature: gene Location: 18653-20352 bp Ori: TRT84695.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 18842-19451 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 8842-1 9451 bp Feature: domain Description: Cas_Cas1 Location: 19637-20348 bp Feature: domain Description: Cas_Cas1 Location: 1 9637-20348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), Phage_int_SAM_1 (pfam02899), INT_C_like_5 (cd01195), RVT-CRISPR, Cas_Cas1 (pfam01867)

Seq: SFBU01000339.1 (6165 bp)
Overview 1 RT 1: 1827-5116 bp Neighborhood of RT #1 [1827, 5145] RVT-UG14 COG2402 Feature: gene Location: 1827-2006 bp Feature: gene Location: 2252-2443 bp Feature: gene Location: 2960-4465 bp Ori: TRT81320.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 3374-3854 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 3374-3854 bp Feature: gene Location: 4757-4978 bp Feature: gene Location: 4978-5145 bp Ori: TRT81321.1 Feature: domain Description: COG2402 Location: 4987-5116 bp Feature: domain Description: COG2 402 Location: 4987-5116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14, COG2402 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: SFBU01000137.1 (20999 bp)
Overview 1 RT 1: 18673-20840 bp Neighborhood of RT #1 [18673, 20869] YfmG RVT-DGRs Avd_like Feature: gene Location: 18673-19026 bp Feature: gene Location: 19282-19425 bp Feature: domain Description: YfmG Location: 19300-19408 bp Feature: domain Description: YfmG Location: 193 00-19408 bp Feature: gene Location: 19432-20490 bp Ori: TRT86726.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19645-20284 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19645-20284 bp Feature: gene Location: 20516-20869 bp Ori: TRT86727.1 Gene: avd Feature: domain Description: Avd_like Location: 20534-20840 bp Feature: domain Description: Avd_like Location: 2053 4-20840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: SFBU01000229.1 (6390 bp)
Overview 1 RT 1: 7-5587 bp Neighborhood of RT #1 [7, 5616] HicB HicA_toxin RVT_N RVT-GII GIIM HNHc TIGR03492 CbiG_C Feature: gene Location: 7-225 bp Ori: TRT84179.1 Feature: domain Description: HicB Location: 19-205 bp Feature: domain Description: HicB Location: 19-205 bp Feature: gene Location: 222-416 bp Ori: TRT84174.1 Feature: domain Description: HicA_toxin Location: 234-390 bp Feature: domain Description: HicA_toxin Location: 234 -390 bp Feature: gene Location: 1473-3374 bp Ori: TRT84175.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1539-1782 bp Feature: domain Description: RVT_N Location: 1539-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827-24 96 bp Feature: domain Description: GIIM Note: maturase Location: 2601-2826 bp Feature: domain Description: GIIM Note: maturase Location: 2601-2826 bp Feature: domain Description: HNHc Note: nucleases Location: 3048-3192 bp Feature: domain Description: HNHc Note: nucleases Location: 304 8-3192 bp Feature: gene Location: 3921-5096 bp Ori: TRT84176.1 Feature: domain Description: TIGR03492 Location: 3939-5082 bp Feature: domain Description: TIGR034 92 Location: 3939-5082 bp Feature: gene Location: 5104-5616 bp Ori: TRT84177.1 Feature: domain Description: CbiG_C Location: 5242-5587 bp Feature: domain Description: CbiG_C Location: 524 2-5587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), HicA_toxin (pfam07927), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TIGR03492 (conserved hypothetical protein), CbiG_C (pfam01890)

Seq: SFBU01000406.1 (4843 bp)
Overview 1 RT 1: 683-4495 bp Neighborhood of RT #1 [683, 4506] RVT-UG19 Nterm_to_SelD Feature: gene Location: 683-896 bp Feature: gene Location: 915-1427 bp Feature: gene Location: 1461-3139 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1848-2355 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1848-235 5 bp Feature: gene Location: 3162-3437 bp Feature: gene Location: 3424-4506 bp Ori: TRT79830.1 Feature: domain Description: Nterm_to_SelD Location: 3427-4495 bp Feature: domain Description: Nterm_to_SelD Location: 3427-4495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, Nterm_to_SelD (TIGR03169)