myRT

myRT report for GCA_007097265.1_ASM709726v1

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Seq: VJZP01000076.1 (1835 bp)
Overview 1 RT 1: 2-1612 bp Neighborhood of RT #1 [2, 1818] RVT-GII GIIM Feature: gene Location: 2-142 bp Feature: gene Location: 502-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1 31 2 bp Feature: domain Description: GIIM Note: maturase Location: 1384-1612 bp Feature: domain Description: GIIM Note: maturase Location: 1 384-1 61 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VJZP01000014.1 (86568 bp)
Overview 1 RT 1: 91-3966 bp Neighborhood of RT #1 [91, 3989] HAD_BPGM_like RVT-GII GIIM RimL recomb_XerD Feature: gene Location: 91-738 bp Feature: domain Description: HAD_BPGM_like Location: 106-646 bp Feature: domain Description: HAD_BPGM_like Location: 106-646 bp Feature: gene Location: 1075-1263 bp Feature: gene Location: 1454-2749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649-2 2 64 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2549 bp Feature: domain Description: GIIM Note: maturase Location: 2 336-2 549 bp Feature: gene Location: 2944-3507 bp Feature: domain Description: RimL Location: 2980-3502 bp Feature: domain Description: RimL Location: 2 980-3502 bp Feature: gene Location: 3660-3989 bp Feature: domain Description: recomb_XerD Location: 3708-3966 bp Feature: domain Description: recomb_XerD Location: 3708-3966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_BPGM_like (cd07526), RVT-GII, GIIM (pfam08388), RimL (COG1670), recomb_XerD (TIGR02225)

Seq: VJZP01000078.1 (1548 bp)
Overview 1 RT 1: 202-1384 bp Neighborhood of RT #1 [202, 1449] RVT-GII GIIM Feature: gene Location: 202-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1084 bp Feature: domain Description: GIIM Note: maturase Location: 1195-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1195-13 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VJZP01000009.1 (134773 bp)
Overview 1 RT 1: 111900-117032 bp Neighborhood of RT #1 [111900, 117085] YceI RVT-Retrons PRK11263 S2P-M50_SpoIVFB_CBS CBS_pair_peptidase_M50 Feature: gene Location: 111900-112046 bp Feature: gene Location: 112212-112784 bp Feature: domain Description: YceI Location: 112254-112782 bp Feature: domain Description: YceI Location: 112254 -112782 bp Feature: gene Location: 113258-114319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113483-114035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1134 83-114 035 bp Feature: gene Location: 114841-116001 bp Feature: domain Description: PRK11263 Location: 114883-115987 bp Feature: domain Description: PRK11263 Location: 114 883-115987 bp Feature: gene Location: 115976-117085 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 116000-116651 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 116000-116651 bp Feature: domain Description: CBS_pair_peptidase_M50 Location: 116696-117032 bp Feature: domain Description: CBS_pair_peptidase_M50 Location: 116696-117032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YceI (smart00867), RVT-Retrons, PRK11263 (cardiolipin synthase ClsB), S2P-M50_SpoIVFB_CBS (cd06164), CBS_pair_peptidase_M50 (cd04801)

Seq: VJZP01000008.1 (143102 bp)
Overview 1 RT 1: 7206-15458 bp Neighborhood of RT #1 [7206, 15529] DUF2779 RVT-UG8 RVT-UG3 T5orf172 Feature: gene Location: 7206-7397 bp Feature: gene Location: 7502-9466 bp Feature: domain Description: DUF2779 Location: 8633-9071 bp Feature: domain Description: DUF2779 Location: 8633-9071 bp Feature: gene Location: 9759-11951 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10383-10833 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10383-10833 bp Feature: gene Location: 11951-13399 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12383-12914 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12383-12914 bp Feature: gene Location: 13438-14286 bp Feature: gene Location: 14330-15529 bp Feature: domain Description: T5orf172 Location: 15188-15458 bp Feature: domain Description: T5 orf172 Location: 15 188-15 45 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2779 (pfam11074), RVT-UG8, RVT-UG3, T5orf172 (smart00974)

Seq: VJZP01000068.1 (3695 bp)
Overview 1 RT 1: 227-3348 bp Neighborhood of RT #1 [227, 3587] Gp49 HTH_XRE RVT-GII GIIM TPR Feature: gene Location: 227-580 bp Feature: domain Description: Gp49 Location: 281-548 bp Feature: domain Description: Gp49 Location: 281-548 bp Feature: gene Location: 586-891 bp Feature: domain Description: HTH_XRE Location: 709-850 bp Feature: domain Description: HTH_XRE Location: 709-850 bp Feature: gene Location: 949-2271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144-1759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144-1759 bp Feature: domain Description: GIIM Note: maturase Location: 1831-2053 bp Feature: domain Description: GIIM Note: maturase Location: 1831-2053 bp Feature: gene Location: 2463-2651 bp Feature: gene Location: 2970-3587 bp Feature: domain Description: TPR Location: 3105-3348 bp Feature: domain Description: TPR Location: 3105-3348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), TPR (smart00028)

Seq: VJZP01000026.1 (61630 bp)
Overview 1 RT 1: 748-5339 bp Neighborhood of RT #1 [748, 5545] couple_hipB RVT-GII GIIM MannoseP_isomer MannoseP_isomer AmyAc_SI_OligoGlu_DGase Feature: gene Location: 748-975 bp Feature: domain Description: couple_hipB Location: 757-925 bp Feature: domain Description: couple_hipB Location: 7 57 -925 bp Feature: gene Location: 1313-2731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-2282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-2282 bp Feature: domain Description: GIIM Note: maturase Location: 2342-2570 bp Feature: domain Description: GIIM Note: maturase Location: 2342-257 0 bp Feature: gene Location: 3348-3863 bp Feature: domain Description: MannoseP_isomer Location: 3387-3495 bp Feature: domain Description: MannoseP_isomer Location: 3387 -3495 bp Feature: domain Description: MannoseP_isomer Location: 3495-3849 bp Feature: domain Description: MannoseP_isomer Location: 3495-3849 bp Feature: gene Location: 3917-5545 bp Feature: domain Description: AmyAc_SI_OligoGlu_DGase Location: 4019-5339 bp Feature: domain Description: AmyAc_SI_OligoGlu_DGase Location: 4019-5339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), RVT-GII, GIIM (pfam08388), MannoseP_isomer (pfam01050), AmyAc_SI_OligoGlu_DGase (cd11333)