myRT

myRT report for GCA_007197895.1_ASM719789v1

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Seq: VKKF01000020.1 Bacteroides sp. HF-5300 Scaffold20_1, whole genome shotgun sequence (110049 bp)
Overview 1 RT 1: 91233-96422 bp Neighborhood of RT #1 [91233, 96436] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 91233-91547 bp Feature: domain Description: DUF3876 Location: 91287-91536 bp Feature: domain Description: DUF3876 Location: 91 287-91 536 bp Feature: gene Location: 91562-93256 bp Feature: domain Description: Bac_Flav_CT_G Location: 91682-93248 bp Feature: domain Description: Bac_Flav_CT_G Location: 91 682-93248 bp Feature: gene Location: 93253-94914 bp Feature: domain Description: RVT_N Location: 93307-93550 bp Feature: domain Description: RVT_N Location: 93307-93550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93595-94243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93595-94243 bp Feature: domain Description: GIIM Note: maturase Location: 94297-94528 bp Feature: domain Description: GIIM Note: maturase Location: 94297-94528 bp Feature: gene Location: 94999-95376 bp Feature: gene Location: 95498-96436 bp Feature: domain Description: Bac_Flav_CT_G Location: 95501-96422 bp Feature: domain Description: Bac_Flav_CT_G Location: 95501 -96422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VKKF01000002.1 Bacteroides sp. HF-5300 Scaffold2_1, whole genome shotgun sequence (281281 bp)
Overview 1 RT 1: 79647-87065 bp Neighborhood of RT #1 [79647, 87115] Tra8 AbiGi AbiGi RVT-UG24 dnaG Feature: gene Location: 79647-80630 bp Feature: domain Description: Tra8 Location: 79653-80610 bp Feature: domain Description: Tra8 Location: 79653-80610 bp Feature: gene Location: 80778-81491 bp Feature: domain Description: AbiGi Location: 80892-81078 bp Feature: domain Description: AbiGi Location: 80892 -81078 bp Feature: domain Description: AbiGi Location: 81174-81363 bp Feature: domain Description: AbiGi Location: 81174-81363 bp Feature: gene Location: 81484-85233 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 82117-82648 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 82 117-82 648 bp Feature: gene Location: 85245-86075 bp Feature: gene Location: 86078-87115 bp Feature: domain Description: dnaG Location: 86168-87065 bp Feature: domain Description: dnaG Location: 86168-87065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), AbiGi (pfam10899), RVT-UG24, dnaG (TIGR01391)

Seq: VKKF01000048.1 Bacteroides sp. HF-5300 Scaffold48_1, whole genome shotgun sequence (2133 bp)
Overview 1 RT 1: 2-1955 bp Neighborhood of RT #1 [2, 1955] RVT_N RVT-GII GIIM Feature: gene Location: 2-1489 bp Feature: domain Description: RVT_N Location: 56-299 bp Feature: domain Description: RVT_N Location: 56-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 44-992 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1277 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1277 bp Feature: gene Location: 1571-1744 bp Feature: gene Location: 1806-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VKKF01000004.1 Bacteroides sp. HF-5300 Scaffold4_1, whole genome shotgun sequence (269373 bp)
Overview 1 RT 1: 35641-38461 bp Neighborhood of RT #1 [35641, 38461] RVT-DGRs Feature: gene Location: 35641-35874 bp Feature: gene Location: 35896-36153 bp Feature: gene Location: 36250-37551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36463-37060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 364 63-37060 bp Feature: gene Location: 37548-38033 bp Feature: gene Location: 38219-38461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VKKF01000005.1 Bacteroides sp. HF-5300 Scaffold5_1, whole genome shotgun sequence (248026 bp)
Overview 1 RT 1: 7575-12897 bp Neighborhood of RT #1 [7575, 17018] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 7575-7817 bp Feature: gene Location: 7997-8482 bp Feature: gene Location: 8479-9783 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8692-9286 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8692-9286 bp Feature: gene Location: 9885-10103 bp Feature: gene Location: 10299-17018 bp Feature: domain Description: Laminin_G_3 Location: 11742-11820 bp Feature: domain Description: Laminin_G_3 Location: 11742-11820 bp Feature: domain Description: Laminin_G_3 Location: 12471-12897 bp Feature: domain Description: Laminin_G_3 Location: 12471-12897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VKKF01000006.1 Bacteroides sp. HF-5300 Scaffold6_1, whole genome shotgun sequence (236139 bp)
Overview 1 RT 1: 14134-24817 bp Neighborhood of RT #1 [14134, 24888] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 14134-15936 bp Feature: domain Description: rpsA Location: 14203-15820 bp Feature: domain Description: rpsA Location: 14203-15820 bp Feature: gene Location: 16033-21990 bp Feature: domain Description: DUF4011 Location: 17263-17776 bp Feature: domain Description: DUF4011 Location: 1726 3-17776 bp Feature: domain Description: DEXXQc_SF1 Location: 18115-18979 bp Feature: domain Description: DEXXQc_SF1 Location: 18115-18979 bp Feature: domain Description: DEXXQc_SF1 Location: 19543-20302 bp Feature: domain Description: DEXXQc_SF1 Location: 19543-20302 bp Feature: domain Description: TIGR00376 Location: 20431-20821 bp Feature: domain Description: TIGR00376 Location: 20431-20821 bp Feature: domain Description: MTES_1575 Location: 20974-21259 bp Feature: domain Description: MTES_1575 Location: 20974-21259 bp Feature: domain Description: DUF3320 Location: 21499-21640 bp Feature: domain Description: DUF3320 Location: 21499-216 40 bp Feature: gene Location: 21992-23122 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22313-22856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22313-22856 bp Feature: gene Location: 23462-23629 bp Feature: gene Location: 23656-24888 bp Feature: domain Description: Arm-DNA-bind_5 Location: 23683-23938 bp Feature: domain Description: Arm-DNA-bind_5 Location: 236 83-23938 bp Feature: domain Description: Phage_int_SAM_5 Location: 23980-24289 bp Feature: domain Description: Phage_int_SAM_5 Location: 23980-24289 bp Feature: domain Description: INTN1_C_like Location: 24337-24817 bp Feature: domain Description: INTN1_C_like Location: 24337-24817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)