myRT

myRT report for GCA_007280435.1_ASM728043v1

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Seq: VKLB01000048.1 (2500 bp)
Overview 1 RT 1: 3-1991 bp Neighborhood of RT #1 [3, 2020] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 3-143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-1 32 bp Feature: gene Location: 155-1666 bp Feature: domain Description: LZ_Tnp_IS66 Location: 257-470 bp Feature: domain Description: LZ_Tnp_IS66 Location: 257-470 bp Feature: domain Description: zf-IS66 Location: 497-623 bp Feature: domain Description: zf-IS66 Location: 497-623 bp Feature: domain Description: DDE_Tnp_IS66 Location: 665-1508 bp Feature: domain Description: DDE_Tnp_IS66 Location: 665-1 508 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1529-1640 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 529-1 640 bp Feature: gene Location: 1730-2020 bp Feature: domain Description: TnpB_IS66 Location: 1733-1991 bp Feature: domain Description: TnpB_IS66 Location: 1 733-1 991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: VKLB01000006.1 (281961 bp)
Overview 1 RT 1: 49287-58128 bp 2 RT 2: 74392-85062 bp Neighborhood of RT #1 [49287, 58136] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74392, 85127] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49287-49961 bp Feature: domain Description: NTP_transferase_like_1 Location: 49293-49932 bp Feature: domain Description: NTP_transferase_like_1 Location: 492 93-49932 bp Feature: gene Location: 49958-50974 bp Feature: domain Description: COG3178 Location: 49961-50960 bp Feature: domain Description: COG3178 Location: 49961-50960 bp Feature: gene Location: 52247-53959 bp Feature: domain Description: RVT_N Location: 52304-52547 bp Feature: domain Description: RVT_N Location: 52 304-52 547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52592-53228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 592 -532 2 8 bp Feature: domain Description: YkfC Location: 53438-53588 bp Feature: domain Description: YkfC Location: 53438-53588 bp Feature: domain Description: HNH Note: nucleases Location: 53765-53903 bp Feature: domain Description: HNH Note: nucleases Location: 53765-53903 bp Feature: gene Location: 54092-56863 bp Feature: domain Description: LptD Location: 54287-56849 bp Feature: domain Description: LptD Location: 542 87-56849 bp Feature: gene Location: 56922-58136 bp Feature: domain Description: PRK10770 Location: 56934-58128 bp Feature: domain Description: PRK10770 Location: 56934-5812 8 bp Feature: gene Location: 74392-76245 bp Feature: domain Description: PRK05658 Location: 74404-76243 bp Feature: domain Description: PRK05658 Location: 74404-762 43 bp Feature: gene Location: 76352-80089 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76460-77117 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76460-77117 bp Feature: domain Description: PRK09776 Location: 77330-77801 bp Feature: domain Description: PRK09776 Location: 77330-77801 bp Feature: domain Description: PAS Location: 77858-78383 bp Feature: domain Description: PAS Location: 77858-78383 bp Feature: domain Description: PRK10060 Location: 78395-80039 bp Feature: domain Description: PRK10060 Location: 78395-80039 bp Feature: gene Location: 81170-82855 bp Feature: domain Description: RVT_N Location: 81227-81467 bp Feature: domain Description: RVT_N Location: 812 2 7-81467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81515-82151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81515-82 151 bp Feature: domain Description: GIIM Note: maturase Location: 82205-82436 bp Feature: domain Description: GIIM Note: maturase Location: 82 2 05-82 436 bp Feature: domain Description: HNH Note: nucleases Location: 82688-82826 bp Feature: domain Description: HNH Note: nucleases Location: 82 688-82 82 6 bp Feature: gene Location: 83578-84699 bp Feature: domain Description: COG3177 Location: 83596-84688 bp Feature: domain Description: COG3177 Location: 83596-84688 bp Feature: gene Location: 84912-85127 bp Feature: domain Description: NERD Location: 84939-85062 bp Feature: domain Description: NERD Location: 84939-85062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: VKLB01000042.1 (43255 bp)
Overview 1 RT 1: 34239-38535 bp Neighborhood of RT #1 [34239, 38618] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34239-34418 bp Feature: gene Location: 34602-35000 bp Feature: gene Location: 35150-36418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35363-36020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 63 -3 6020 bp Feature: domain Description: GIIM Note: maturase Location: 36098-36320 bp Feature: domain Description: GIIM Note: maturase Location: 3 6098-3 63 20 bp Feature: gene Location: 36807-37448 bp Feature: domain Description: DUF772 Location: 36957-37152 bp Feature: domain Description: DUF772 Location: 3 6957-3 7152 bp Feature: gene Location: 37791-38618 bp Feature: domain Description: ABC_phnC Location: 37821-38535 bp Feature: domain Description: ABC_phnC Location: 3 7821-3 853 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VKLB01000003.1 (184921 bp)
Overview 1 RT 1: 85985-91571 bp Neighborhood of RT #1 [85985, 91571] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85985-86821 bp Feature: domain Description: HDOD Location: 85988-86816 bp Feature: domain Description: HDOD Location: 85988-86816 bp Feature: gene Location: 86922-87866 bp Feature: domain Description: YgfZ Location: 86931-87831 bp Feature: domain Description: YgfZ Location: 86931-87831 bp Feature: gene Location: 89589-90908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89592-90168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89592-90168 bp Feature: domain Description: YkfC Location: 90366-90522 bp Feature: domain Description: YkfC Location: 90366-90522 bp Feature: domain Description: HNH Note: nucleases Location: 90705-90843 bp Feature: domain Description: HNH Note: nucleases Location: 90705-9084 3 bp Feature: gene Location: 90984-91238 bp Feature: domain Description: SdhE Location: 90990-91230 bp Feature: domain Description: SdhE Location: 90990-91230 bp Feature: gene Location: 91377-91571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VKLB01000027.1 (36283 bp)
Overview 1 RT 1: 25940-34112 bp Neighborhood of RT #1 [25940, 34306] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25940-27811 bp Feature: domain Description: DUF262 Location: 25988-26756 bp Feature: domain Description: DUF262 Location: 25 988-2675 6 bp Feature: gene Location: 27815-29596 bp Feature: domain Description: YeeA Location: 28682-29462 bp Feature: domain Description: YeeA Location: 28682-29462 bp Feature: gene Location: 29593-32613 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30088-30559 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30088-305 5 9 bp Feature: gene Location: 32610-33167 bp Feature: gene Location: 33167-34306 bp Feature: domain Description: AAA_21 Location: 33239-33308 bp Feature: domain Description: AAA_21 Location: 33239-33308 bp Feature: domain Description: AAA_21 Location: 33782-34112 bp Feature: domain Description: AAA_21 Location: 33782-34112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)