myRT

myRT report for GCA_007341375.1_ASM734137v1

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Seq: VJZV01000016.1 (161548 bp)
Overview 1 RT 1: 148327-154571 bp Neighborhood of RT #1 [148327, 154813] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 148327-148941 bp Feature: gene Location: 149036-150271 bp Feature: domain Description: TraG-D_C Location: 149618-149951 bp Feature: domain Description: TraG-D_C Location: 1 4961 8-1 49951 bp Feature: gene Location: 150276-151928 bp Feature: domain Description: RVT_N Location: 150330-150573 bp Feature: domain Description: RVT_N Location: 1 50330-1 50573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150618-151266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5061 8-1 51 266 bp Feature: domain Description: GIIM Note: maturase Location: 151320-151551 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 320-1 51 551 bp Feature: gene Location: 152565-153488 bp Feature: domain Description: YWFCY Location: 152571-152748 bp Feature: domain Description: YWFCY Location: 1 52571 -1 52748 bp Feature: gene Location: 153551-154813 bp Feature: domain Description: Relaxase Location: 153731-154205 bp Feature: domain Description: Relaxase Location: 1 53731 -1 54205 bp Feature: domain Description: Relaxase Location: 154361-154571 bp Feature: domain Description: Relaxase Location: 1 54361 -1 54571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000012.1 (198428 bp)
Overview 1 RT 1: 7864-9407 bp Neighborhood of RT #1 [7864, 9407] HTH_28 RVT-GII Feature: gene Location: 7864-8016 bp Feature: gene Location: 8194-8484 bp Feature: domain Description: HTH_28 Location: 8218-8362 bp Feature: domain Description: HTH_2 8 Location: 82 18-8362 bp Feature: gene Location: 8605-8802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8608-8800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8608-8800 bp Feature: gene Location: 8832-9041 bp Feature: gene Location: 9045-9407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000003.1 (500537 bp)
Overview 1 RT 1: 470698-482974 bp Neighborhood of RT #1 [470698, 483090] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 470698-471522 bp Feature: domain Description: PDDEXK_2 Location: 470719-471397 bp Feature: domain Description: PDDEXK_2 Location: 470719-4713 97 bp Feature: gene Location: 471689-473896 bp Feature: gene Location: 474102-475232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 474423-474966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 474423 -474966 bp Feature: gene Location: 475234-481191 bp Feature: domain Description: DUF4011 Location: 476464-476977 bp Feature: domain Description: DUF4011 Location: 476464-476977 bp Feature: domain Description: DEXXQc_SF1 Location: 477316-477937 bp Feature: domain Description: DEXXQc_SF1 Location: 4773 16-47793 7 bp Feature: domain Description: DEXXQc_SF1 Location: 478744-479503 bp Feature: domain Description: DEXXQc_SF1 Location: 478744-479503 bp Feature: domain Description: TIGR00376 Location: 479632-480022 bp Feature: domain Description: TIGR003 76 Location: 47963 2-480022 bp Feature: domain Description: MTES_1575 Location: 480175-480460 bp Feature: domain Description: MTES_1575 Location: 480175-480460 bp Feature: domain Description: DUF3320 Location: 480700-480841 bp Feature: domain Description: DUF3 3 20 Location: 480700-480841 bp Feature: gene Location: 481288-483090 bp Feature: domain Description: rpsA Location: 481357-482974 bp Feature: domain Description: rpsA Location: 4813 57-482974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000083.1 (2508 bp)
Overview 1 RT 1: 582-2367 bp Neighborhood of RT #1 [582, 2405] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 582-2405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 6-1668 bp Feature: domain Description: Intron_maturas2 Location: 1842-2085 bp Feature: domain Description: Intron_maturas2 Location: 184 2-2085 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2367 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000057.1 (12007 bp)
Overview 1 RT 1: 1-5532 bp Neighborhood of RT #1 [1, 5567] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Feature: gene Location: 1-243 bp Feature: domain Description: DUF4134 Location: 4-238 bp Feature: domain Description: DUF4134 Location: 4-238 bp Feature: gene Location: 456-797 bp Feature: gene Location: 852-2660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1935 bp Feature: domain Description: Intron_maturas2 Location: 2010-2337 bp Feature: domain Description: Intron_maturas2 Location: 2010-2337 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-2637 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-2637 bp Feature: gene Location: 2650-3045 bp Feature: domain Description: DUF4133 Location: 2779-3010 bp Feature: domain Description: DUF4133 Location: 2779-3010 bp Feature: gene Location: 3042-5567 bp Feature: domain Description: Bac_Flav_CT_G Location: 3045-5532 bp Feature: domain Description: Bac_Flav_CT_G Location: 3045 -5 5 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000082.1 (2509 bp)
Overview 1 RT 1: 1-1613 bp Neighborhood of RT #1 [1, 1945] matK RVT-GII Intron_maturas2 Feature: gene Location: 1-156 bp Feature: gene Location: 143-1945 bp Feature: domain Description: matK Location: 212-299 bp Feature: domain Description: matK Location: 212-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1229 bp Feature: domain Description: Intron_maturas2 Location: 1379-1613 bp Feature: domain Description: Intron_maturas2 Location: 1379-16 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000030.1 (65536 bp)
Overview 1 RT 1: 16998-26298 bp Neighborhood of RT #1 [16998, 26303] RVT_N RVT-GII YkfC COG4646 DUF1896 Feature: gene Location: 16998-17198 bp Feature: gene Location: 17597-18799 bp Feature: gene Location: 18753-20489 bp Feature: domain Description: RVT_N Location: 18876-19119 bp Feature: domain Description: RVT_N Location: 1887 6-19119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19812 bp Feature: domain Description: YkfC Location: 20022-20112 bp Feature: domain Description: YkfC Location: 20022-20112 bp Feature: gene Location: 21095-25867 bp Feature: domain Description: COG4646 Location: 23486-25487 bp Feature: domain Description: COG4646 Location: 23486-25487 bp Feature: gene Location: 25854-26303 bp Feature: domain Description: DUF1896 Location: 25875-26298 bp Feature: domain Description: DUF1896 Location: 2587 5-26298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000044.1 (30507 bp)
Overview 1 RT 1: 8975-17242 bp Neighborhood of RT #1 [8975, 17253] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 8975-9196 bp Feature: domain Description: DUF4134 Location: 9005-9182 bp Feature: domain Description: DUF4134 Location: 9005-918 2 bp Feature: gene Location: 9321-9530 bp Feature: gene Location: 9812-11467 bp Feature: domain Description: RVT_N Location: 9869-10106 bp Feature: domain Description: RVT_N Location: 98 69-10106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10157-10805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10157-108 05 bp Feature: domain Description: GIIM Note: maturase Location: 10862-11093 bp Feature: domain Description: GIIM Note: maturase Location: 108 62-11093 bp Feature: gene Location: 11464-11706 bp Feature: domain Description: DUF4134 Location: 11611-11701 bp Feature: domain Description: DUF4134 Location: 11611-11701 bp Feature: gene Location: 11730-12053 bp Feature: domain Description: DUF4133 Location: 11745-12012 bp Feature: domain Description: DUF4133 Location: 11745-12012 bp Feature: gene Location: 12050-12988 bp Feature: domain Description: Bac_Flav_CT_G Location: 12053-12974 bp Feature: domain Description: Bac_Flav_CT_G Location: 12053-12974 bp Feature: gene Location: 13167-13316 bp Feature: gene Location: 13572-15233 bp Feature: domain Description: RVT_N Location: 13626-13869 bp Feature: domain Description: RVT_N Location: 13626-138 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13914-14562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13914-14562 bp Feature: domain Description: GIIM Note: maturase Location: 14616-14847 bp Feature: domain Description: GIIM Note: maturase Location: 14616-148 47 bp Feature: gene Location: 15230-16924 bp Feature: domain Description: Bac_Flav_CT_G Location: 15350-16916 bp Feature: domain Description: Bac_Flav_CT_G Location: 15350-16916 bp Feature: gene Location: 16939-17253 bp Feature: domain Description: DUF3876 Location: 16993-17242 bp Feature: domain Description: DUF38 76 Location: 16993-17242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000023.1 (94539 bp)
Overview 1 RT 1: 146-5337 bp Neighborhood of RT #1 [146, 5366] FolA RibD_C TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY T4SS-DNA_transf Feature: gene Location: 146-595 bp Feature: domain Description: FolA Location: 188-281 bp Feature: domain Description: FolA Location: 188-281 bp Feature: domain Description: RibD_C Location: 407-563 bp Feature: domain Description: RibD_C Location: 407-563 bp Feature: gene Location: 838-2019 bp Feature: domain Description: TraG-D_C Location: 1363-1696 bp Feature: domain Description: TraG-D_C Location: 1363-169 6 bp Feature: gene Location: 2006-3811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-3092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-309 2 bp Feature: domain Description: Intron_maturas2 Location: 3170-3500 bp Feature: domain Description: Intron_maturas2 Location: 3170-3500 bp Feature: domain Description: HNHc Note: nucleases Location: 3644-3788 bp Feature: domain Description: HNHc Note: nucleases Location: 3644-3788 bp Feature: gene Location: 3813-4328 bp Feature: gene Location: 4356-5366 bp Feature: domain Description: YWFCY Location: 4362-4539 bp Feature: domain Description: YWFCY Location: 4362-4539 bp Feature: domain Description: T4SS-DNA_transf Location: 4830-5337 bp Feature: domain Description: T4SS-DNA_transf Location: 4830-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000009.1 (224012 bp)
Overview 1 RT 1: 42391-47100 bp Neighborhood of RT #1 [42391, 47114] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 42391-44220 bp Feature: domain Description: Bac_Flav_CT_G Location: 42394-44206 bp Feature: domain Description: Bac_Flav_CT_G Location: 42394-44206 bp Feature: gene Location: 44248-44421 bp Feature: gene Location: 44767-46578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45031-45853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45031-45853 bp Feature: domain Description: Intron_maturas2 Location: 45928-46243 bp Feature: domain Description: Intron_maturas2 Location: 45928-46243 bp Feature: domain Description: HNHc Note: nucleases Location: 46399-46549 bp Feature: domain Description: HNHc Note: nucleases Location: 46399-46549 bp Feature: gene Location: 46656-46934 bp Feature: domain Description: Bac_Flav_CT_G Location: 46674-46932 bp Feature: domain Description: Bac_Flav_CT_G Location: 46674-46932 bp Feature: gene Location: 46941-47114 bp Feature: domain Description: Bac_Flav_CT_G Location: 46944-47100 bp Feature: domain Description: Bac_Flav_CT_G Location: 46944-4710 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000084.1 (2493 bp)
Overview 1 RT 1: 116-2356 bp Neighborhood of RT #1 [116, 2356] RVT-GII Intron_maturas2 Feature: gene Location: 116-1924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: domain Description: Intron_maturas2 Location: 1271-1580 bp Feature: domain Description: Intron_maturas2 Location: 1271-1580 bp Feature: gene Location: 2213-2356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000025.1 (91612 bp)
Overview 1 RT 1: 50462-56510 bp Neighborhood of RT #1 [50462, 57160] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 50462-51040 bp Feature: domain Description: NGN_SP_UpxY Location: 50540-50822 bp Feature: domain Description: NGN_SP_UpxY Location: 50540-50822 bp Feature: domain Description: KOW_NusG Location: 50873-50984 bp Feature: domain Description: KOW_NusG Location: 50873-50984 bp Feature: gene Location: 51375-52340 bp Feature: domain Description: Phage_int_SAM_5 Location: 51408-51663 bp Feature: domain Description: Phage_int_SAM_5 Location: 51408-51663 bp Feature: domain Description: INTN1_C_like Location: 51768-52245 bp Feature: domain Description: INTN1_C_like Location: 51768-52245 bp Feature: gene Location: 52619-54838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52820-53405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52820-53405 bp Feature: gene Location: 54816-55460 bp Feature: gene Location: 55457-57160 bp Feature: domain Description: REC Location: 56252-56510 bp Feature: domain Description: REC Location: 56252-56510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJZV01000039.1 (34910 bp)
Overview 1 RT 1: 29069-33188 bp Neighborhood of RT #1 [29069, 33193] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 29069-29566 bp Feature: domain Description: Bac_Flav_CT_N Location: 29072-29147 bp Feature: domain Description: Bac_Flav_CT_N Location: 29072-29147 bp Feature: domain Description: Bac_Flav_CT_N Location: 29282-29546 bp Feature: domain Description: Bac_Flav_CT_N Location: 29282-29546 bp Feature: gene Location: 29737-30072 bp Feature: gene Location: 30107-31918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30371-31193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30371-31193 bp Feature: domain Description: Intron_maturas2 Location: 31262-31571 bp Feature: domain Description: Intron_maturas2 Location: 31262-31571 bp Feature: gene Location: 31908-32615 bp Feature: domain Description: Bac_Flav_CT_N Location: 32034-32595 bp Feature: domain Description: Bac_Flav_CT_N Location: 32034-32595 bp Feature: gene Location: 32618-33193 bp Feature: domain Description: TraO Location: 32693-33188 bp Feature: domain Description: TraO Location: 32693-33188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT