myRT

myRT report for GCA_007341395.1_ASM734139v1

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Seq: VJYL01000046.1 (30507 bp)
Overview 1 RT 1: 8975-17242 bp Neighborhood of RT #1 [8975, 17253] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 8975-9196 bp Feature: domain Description: DUF4134 Location: 9005-9182 bp Feature: domain Description: DUF41 34 Location: 9005-91 82 bp Feature: gene Location: 9321-9530 bp Feature: gene Location: 9812-11467 bp Feature: domain Description: RVT_N Location: 9869-10106 bp Feature: domain Description: RVT_N Location: 9869-1 01 06 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10157-10805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 57-1 0805 bp Feature: domain Description: GIIM Note: maturase Location: 10862-11093 bp Feature: domain Description: GIIM Note: maturase Location: 1 0862-1 1 093 bp Feature: gene Location: 11464-11706 bp Feature: domain Description: DUF4134 Location: 11611-11701 bp Feature: domain Description: DUF41 34 Location: 1 1 61 1 -1 1 701 bp Feature: gene Location: 11730-12053 bp Feature: domain Description: DUF4133 Location: 11745-12012 bp Feature: domain Description: DUF41 33 Location: 1 1 745-1 201 2 bp Feature: gene Location: 12050-12988 bp Feature: domain Description: Bac_Flav_CT_G Location: 12053-12974 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 2053-1 2974 bp Feature: gene Location: 13167-13316 bp Feature: gene Location: 13572-15233 bp Feature: domain Description: RVT_N Location: 13626-13869 bp Feature: domain Description: RVT_N Location: 1 3626-1 3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13914-14562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 391 4-1 4562 bp Feature: domain Description: GIIM Note: maturase Location: 14616-14847 bp Feature: domain Description: GIIM Note: maturase Location: 1 461 6-1 4847 bp Feature: gene Location: 15230-16924 bp Feature: domain Description: Bac_Flav_CT_G Location: 15350-16916 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 5350-1 691 6 bp Feature: gene Location: 16939-17253 bp Feature: domain Description: DUF3876 Location: 16993-17242 bp Feature: domain Description: DUF3876 Location: 1 6993-1 7242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000084.1 (2508 bp)
Overview 1 RT 1: 582-2367 bp Neighborhood of RT #1 [582, 2405] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 582-2405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1668 bp Feature: domain Description: Intron_maturas2 Location: 1842-2085 bp Feature: domain Description: Intron_maturas2 Location: 1842 -2 085 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2367 bp Feature: domain Description: HNHc Note: nucleases Location: 2 196-2 367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000059.1 (12007 bp)
Overview 1 RT 1: 1-5532 bp Neighborhood of RT #1 [1, 5567] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Feature: gene Location: 1-243 bp Feature: domain Description: DUF4134 Location: 4-238 bp Feature: domain Description: DUF413 4 Location: 4-23 8 bp Feature: gene Location: 456-797 bp Feature: gene Location: 852-2660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-193 5 bp Feature: domain Description: Intron_maturas2 Location: 2010-2337 bp Feature: domain Description: Intron_maturas2 Location: 2010-23 3 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-2637 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-263 7 bp Feature: gene Location: 2650-3045 bp Feature: domain Description: DUF4133 Location: 2779-3010 bp Feature: domain Description: DUF413 3 Location: 2779-3 010 bp Feature: gene Location: 3042-5567 bp Feature: domain Description: Bac_Flav_CT_G Location: 3045-5532 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 045-553 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000010.1 (208058 bp)
Overview 1 RT 1: 26437-31146 bp Neighborhood of RT #1 [26437, 31160] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 26437-28266 bp Feature: domain Description: Bac_Flav_CT_G Location: 26440-28252 bp Feature: domain Description: Bac_Flav_CT_G Location: 264 4 0-28252 bp Feature: gene Location: 28294-28467 bp Feature: gene Location: 28813-30624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29077-29899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29077-29899 bp Feature: domain Description: Intron_maturas2 Location: 29974-30289 bp Feature: domain Description: Intron_maturas2 Location: 29974 -30289 bp Feature: domain Description: HNHc Note: nucleases Location: 30445-30595 bp Feature: domain Description: HNHc Note: nucleases Location: 304 4 5-30595 bp Feature: gene Location: 30702-30980 bp Feature: domain Description: Bac_Flav_CT_G Location: 30720-30978 bp Feature: domain Description: Bac_Flav_CT_G Location: 30720-30978 bp Feature: gene Location: 30987-31160 bp Feature: domain Description: Bac_Flav_CT_G Location: 30990-31146 bp Feature: domain Description: Bac_Flav_CT_G Location: 30990-3114 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000027.1 (91612 bp)
Overview 1 RT 1: 50462-56510 bp Neighborhood of RT #1 [50462, 57160] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 50462-51040 bp Feature: domain Description: NGN_SP_UpxY Location: 50540-50822 bp Feature: domain Description: NGN_SP_UpxY Location: 5 05 40-5 0822 bp Feature: domain Description: KOW_NusG Location: 50873-50984 bp Feature: domain Description: KOW_NusG Location: 5 0873-5 0984 bp Feature: gene Location: 51375-52340 bp Feature: domain Description: Phage_int_SAM_5 Location: 51408-51663 bp Feature: domain Description: Phage_int_SAM_5 Location: 5 1408-5 1663 bp Feature: domain Description: INTN1_C_like Location: 51768-52245 bp Feature: domain Description: INTN1_C_like Location: 5 1768-5 2245 bp Feature: gene Location: 52619-54838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52820-53405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 2820-5 3405 bp Feature: gene Location: 54816-55460 bp Feature: gene Location: 55457-57160 bp Feature: domain Description: REC Location: 56252-56510 bp Feature: domain Description: REC Location: 5 625 2-5 65 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000017.1 (161548 bp)
Overview 1 RT 1: 148327-154571 bp Neighborhood of RT #1 [148327, 154813] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 148327-148941 bp Feature: gene Location: 149036-150271 bp Feature: domain Description: TraG-D_C Location: 149618-149951 bp Feature: domain Description: TraG-D_C Location: 1496 18-149951 bp Feature: gene Location: 150276-151928 bp Feature: domain Description: RVT_N Location: 150330-150573 bp Feature: domain Description: RVT_N Location: 150330-150573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150618-151266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506 18-15126 6 bp Feature: domain Description: GIIM Note: maturase Location: 151320-151551 bp Feature: domain Description: GIIM Note: maturase Location: 151320-151551 bp Feature: gene Location: 152565-153488 bp Feature: domain Description: YWFCY Location: 152571-152748 bp Feature: domain Description: YWFCY Location: 152571-152748 bp Feature: gene Location: 153551-154813 bp Feature: domain Description: Relaxase Location: 153731-154205 bp Feature: domain Description: Relaxase Location: 153731-154205 bp Feature: domain Description: Relaxase Location: 154361-154571 bp Feature: domain Description: Relaxase Location: 15436 1-154571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000013.1 (199331 bp)
Overview 1 RT 1: 183678-193784 bp Neighborhood of RT #1 [183678, 193795] YhcG COG4646 Helicase_C matK RVT-GII Intron_maturas2 N6_Mtase COG4646 DUF1896 Feature: gene Location: 183678-184691 bp Feature: domain Description: YhcG Location: 184011-184494 bp Feature: domain Description: YhcG Location: 184011-184494 bp Feature: gene Location: 184755-187532 bp Feature: domain Description: COG4646 Location: 184869-186006 bp Feature: domain Description: COG4646 Location: 184869-186006 bp Feature: domain Description: Helicase_C Location: 186204-186423 bp Feature: domain Description: Helicase_C Location: 186204-186423 bp Feature: gene Location: 187519-189321 bp Feature: domain Description: matK Location: 187588-187675 bp Feature: domain Description: matK Location: 187 588-187 67 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187783-188605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187 7 83-188605 bp Feature: domain Description: Intron_maturas2 Location: 188755-188989 bp Feature: domain Description: Intron_maturas2 Location: 1887 55-188989 bp Feature: gene Location: 189874-193359 bp Feature: domain Description: N6_Mtase Location: 190165-190804 bp Feature: domain Description: N6_Mtase Location: 190165-190804 bp Feature: domain Description: COG4646 Location: 192412-193348 bp Feature: domain Description: COG4646 Location: 192412-193348 bp Feature: gene Location: 193346-193795 bp Feature: domain Description: DUF1896 Location: 193376-193784 bp Feature: domain Description: DUF1896 Location: 19337 6-1937 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000085.1 (2493 bp)
Overview 1 RT 1: 570-2034 bp Neighborhood of RT #1 [570, 2378] RVT-GII Intron_maturas2 Feature: gene Location: 570-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834-1656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 34-1656 bp Feature: domain Description: Intron_maturas2 Location: 1725-2034 bp Feature: domain Description: Intron_maturas2 Location: 1725-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000021.1 (132061 bp)
Overview 1 RT 1: 102214-114490 bp Neighborhood of RT #1 [102214, 114606] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 102214-103038 bp Feature: domain Description: PDDEXK_2 Location: 102235-102913 bp Feature: domain Description: PDDEXK_2 Location: 102235-1029 13 bp Feature: gene Location: 103205-105412 bp Feature: gene Location: 105618-106748 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105939-106482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1059 39 -106482 bp Feature: gene Location: 106750-112707 bp Feature: domain Description: DUF4011 Location: 107980-108493 bp Feature: domain Description: DUF4011 Location: 1079 80-10849 3 bp Feature: domain Description: DEXXQc_SF1 Location: 108832-109453 bp Feature: domain Description: DEXXQc_SF1 Location: 108832-109 453 bp Feature: domain Description: DEXXQc_SF1 Location: 110260-111019 bp Feature: domain Description: DEXXQc_SF1 Location: 110260-111019 bp Feature: domain Description: TIGR00376 Location: 111148-111538 bp Feature: domain Description: TIGR00376 Location: 111148-111538 bp Feature: domain Description: MTES_1575 Location: 111691-111976 bp Feature: domain Description: MTES_1575 Location: 11169 1-1119 76 bp Feature: domain Description: DUF3320 Location: 112216-112357 bp Feature: domain Description: DUF3320 Location: 112216-112357 bp Feature: gene Location: 112804-114606 bp Feature: domain Description: rpsA Location: 112873-114490 bp Feature: domain Description: rpsA Location: 112873-11449 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000014.1 (198428 bp)
Overview 1 RT 1: 7864-9407 bp Neighborhood of RT #1 [7864, 9407] HTH_28 RVT-GII Feature: gene Location: 7864-8016 bp Feature: gene Location: 8194-8484 bp Feature: domain Description: HTH_28 Location: 8218-8362 bp Feature: domain Description: HTH_28 Location: 8218-8362 bp Feature: gene Location: 8605-8802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8608-8800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8608-8800 bp Feature: gene Location: 8832-9041 bp Feature: gene Location: 9045-9407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000025.1 (94539 bp)
Overview 1 RT 1: 146-5337 bp Neighborhood of RT #1 [146, 5366] FolA RibD_C TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY T4SS-DNA_transf Feature: gene Location: 146-595 bp Feature: domain Description: FolA Location: 188-281 bp Feature: domain Description: FolA Location: 188-281 bp Feature: domain Description: RibD_C Location: 407-563 bp Feature: domain Description: RibD_C Location: 407-563 bp Feature: gene Location: 838-2019 bp Feature: domain Description: TraG-D_C Location: 1363-1696 bp Feature: domain Description: TraG-D_C Location: 1363-1696 bp Feature: gene Location: 2006-3811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-3092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2270-3092 bp Feature: domain Description: Intron_maturas2 Location: 3170-3500 bp Feature: domain Description: Intron_maturas2 Location: 3170-3500 bp Feature: domain Description: HNHc Note: nucleases Location: 3644-3788 bp Feature: domain Description: HNHc Note: nucleases Location: 3644-3788 bp Feature: gene Location: 3813-4328 bp Feature: gene Location: 4356-5366 bp Feature: domain Description: YWFCY Location: 4362-4539 bp Feature: domain Description: YWFCY Location: 4362-4539 bp Feature: domain Description: T4SS-DNA_transf Location: 4830-5337 bp Feature: domain Description: T4SS-DNA_transf Location: 4830-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000041.1 (34910 bp)
Overview 1 RT 1: 29069-33188 bp Neighborhood of RT #1 [29069, 33193] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 29069-29566 bp Feature: domain Description: Bac_Flav_CT_N Location: 29072-29147 bp Feature: domain Description: Bac_Flav_CT_N Location: 29072-29147 bp Feature: domain Description: Bac_Flav_CT_N Location: 29282-29546 bp Feature: domain Description: Bac_Flav_CT_N Location: 29282-29546 bp Feature: gene Location: 29737-30072 bp Feature: gene Location: 30107-31918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30371-31193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30371-31193 bp Feature: domain Description: Intron_maturas2 Location: 31262-31571 bp Feature: domain Description: Intron_maturas2 Location: 312 62-31571 bp Feature: gene Location: 31908-32615 bp Feature: domain Description: Bac_Flav_CT_N Location: 32034-32595 bp Feature: domain Description: Bac_Flav_CT_N Location: 32034-32595 bp Feature: gene Location: 32618-33193 bp Feature: domain Description: TraO Location: 32693-33188 bp Feature: domain Description: TraO Location: 32693-33188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: VJYL01000032.1 (65536 bp)
Overview 1 RT 1: 16998-26298 bp Neighborhood of RT #1 [16998, 26303] RVT_N RVT-GII YkfC COG4646 DUF1896 Feature: gene Location: 16998-17198 bp Feature: gene Location: 17597-18799 bp Feature: gene Location: 18753-20489 bp Feature: domain Description: RVT_N Location: 18876-19119 bp Feature: domain Description: RVT_N Location: 18876-19119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19164-19812 bp Feature: domain Description: YkfC Location: 20022-20112 bp Feature: domain Description: YkfC Location: 20022-20112 bp Feature: gene Location: 21095-25867 bp Feature: domain Description: COG4646 Location: 23486-25487 bp Feature: domain Description: COG4646 Location: 23486-25487 bp Feature: gene Location: 25854-26303 bp Feature: domain Description: DUF1896 Location: 25875-26298 bp Feature: domain Description: DUF1896 Location: 25875-26298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT