myRT

myRT report for GCA_007679475.1_ASM767947v1

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Seq: VEGO01000025.1 (73731 bp)
Overview 1 RT 1: 7501-12310 bp Neighborhood of RT #1 [7501, 12315] beta_clamp RVT-GII COG4712 Feature: gene Location: 7501-8613 bp Feature: domain Description: beta_clamp Location: 7504-8608 bp Feature: domain Description: beta_clamp Location: 7504-8608 bp Feature: gene Location: 8694-9221 bp Feature: gene Location: 9299-11200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9617-10319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 961 7-1 031 9 bp Feature: gene Location: 11395-11535 bp Feature: gene Location: 11959-12315 bp Feature: domain Description: COG4712 Location: 11968-12310 bp Feature: domain Description: COG471 2 Location: 1 1 968-1 231 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT beta_clamp (cl29549), RVT-GII, COG4712 (Uncharacterized protein )

Seq: VEGO01000038.1 (19423 bp)
Overview 1 RT 1: 2625-11971 bp Neighborhood of RT #1 [2625, 11976] AzgA guaA RVT-UG3 RVT-UG8 groEL groES Feature: gene Location: 2625-3950 bp Feature: domain Description: AzgA Location: 2628-3942 bp Feature: domain Description: AzgA Location: 2 62 8-3942 bp Feature: gene Location: 4335-5882 bp Feature: domain Description: guaA Location: 4356-5880 bp Feature: domain Description: guaA Location: 4356-5880 bp Feature: gene Location: 6399-7553 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6594-7047 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6594-7047 bp Feature: gene Location: 7902-9815 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8376-8841 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8376-8841 bp Feature: gene Location: 10019-11653 bp Feature: domain Description: groEL Location: 10022-11639 bp Feature: domain Description: groEL Location: 1002 2 -11639 bp Feature: gene Location: 11692-11976 bp Feature: domain Description: groES Location: 11695-11971 bp Feature: domain Description: groES Location: 11695-11971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AzgA (COG2252), guaA (PRK00074), RVT-UG3, RVT-UG8, groEL (PRK12852), groES (PRK14533)

Seq: VEGO01000059.1 (2366 bp)
Overview 1 RT 1: 611-1904 bp Neighborhood of RT #1 [611, 2257] RVT_N RVT-GII GIIM Feature: gene Location: 611-2257 bp Feature: domain Description: RVT_N Location: 653-890 bp Feature: domain Description: RVT_N Location: 653 -890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944-1604 bp Feature: domain Description: GIIM Note: maturase Location: 1673-1904 bp Feature: domain Description: GIIM Note: maturase Location: 1673 -1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VEGO01000015.1 (119405 bp)
Overview 1 RT 1: 83711-94898 bp Neighborhood of RT #1 [83711, 94898] HELICc RVT-GII HNHc DEXDc MTS RVT-GII HNHc Feature: gene Location: 83711-84424 bp Feature: gene Location: 84441-86123 bp Feature: domain Description: HELICc Location: 85107-85506 bp Feature: domain Description: HELICc Location: 85107-85506 bp Feature: gene Location: 86184-87983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86487-87189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864 87-87189 bp Feature: domain Description: HNHc Note: nucleases Location: 87714-87864 bp Feature: domain Description: HNHc Note: nucleases Location: 87714 -87864 bp Feature: gene Location: 88684-90363 bp Feature: domain Description: DEXDc Location: 89464-90337 bp Feature: domain Description: DEXDc Location: 894 64 -90337 bp Feature: gene Location: 90435-90662 bp Feature: gene Location: 90678-91799 bp Feature: domain Description: MTS Location: 90774-91137 bp Feature: domain Description: MTS Location: 90774 -91137 bp Feature: gene Location: 91944-93872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92265-93000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92265-93000 bp Feature: domain Description: HNHc Note: nucleases Location: 93591-93756 bp Feature: domain Description: HNHc Note: nucleases Location: 93591-93756 bp Feature: gene Location: 94129-94308 bp Feature: gene Location: 94755-94898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HELICc (smart00490), RVT-GII, HNHc (smart00507), DEXDc (smart00487), MTS (pfam05175)

Seq: VEGO01000023.1 (91950 bp)
Overview 1 RT 1: 60945-65241 bp Neighborhood of RT #1 [60945, 65294] ComJ RVT-GII Intron_maturas2 HNHc HTH_MlrA-like_sg1 DUF3967 Feature: gene Location: 60945-61334 bp Feature: domain Description: ComJ Location: 60951-61323 bp Feature: domain Description: ComJ Location: 6095 1-61323 bp Feature: gene Location: 61371-61535 bp Feature: gene Location: 61603-63396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61846-62677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61846-62677 bp Feature: domain Description: Intron_maturas2 Location: 62758-63046 bp Feature: domain Description: Intron_maturas2 Location: 6275 8-63046 bp Feature: domain Description: HNHc Note: nucleases Location: 63226-63367 bp Feature: domain Description: HNHc Note: nucleases Location: 63226-63367 bp Feature: gene Location: 64001-64330 bp Feature: gene Location: 64542-65294 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 64560-64716 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 645 60-64716 bp Feature: domain Description: DUF3967 Location: 65148-65241 bp Feature: domain Description: DUF3967 Location: 65 148-65 241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComJ (pfam11033), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_MlrA-like_sg1 (cd04764), DUF3967 (pfam13152)

Seq: VEGO01000063.1 (1696 bp)
Overview 1 RT 1: 1-1465 bp Neighborhood of RT #1 [1, 1581] RVT-GII HNHc Feature: gene Location: 1-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-754 bp Feature: domain Description: HNHc Note: nucleases Location: 1333-1465 bp Feature: domain Description: HNHc Note: nucleases Location: 1333-146 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)