myRT

myRT report for GCA_007694185.1_ASM769418v1

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Seq: RECD01000177.1 (20608 bp)
Overview 1 RT 1: 7755-16524 bp Neighborhood of RT #1 [7755, 16524] PSCyt1 PSD5 PSD4 PSCyt3 PSD2 HXXSHH RVT-Retrons YejR Feature: gene Location: 7755-10256 bp Feature: domain Description: PSCyt1 Location: 7896-8031 bp Feature: domain Description: PSCyt1 Location: 7896-8031 bp Feature: domain Description: PSD5 Location: 8781-8916 bp Feature: domain Description: PSD5 Location: 8781 -891 6 bp Feature: domain Description: PSD4 Location: 8961-9348 bp Feature: domain Description: PSD4 Location: 8961 -9348 bp Feature: domain Description: PSCyt3 Location: 9654-9939 bp Feature: domain Description: PSCyt3 Location: 9654-9939 bp Feature: domain Description: PSD2 Location: 10005-10212 bp Feature: domain Description: PSD2 Location: 1 0005-1 021 2 bp Feature: gene Location: 10253-11572 bp Feature: domain Description: HXXSHH Location: 10373-11249 bp Feature: domain Description: HXXSHH Location: 1 0373-1 1 249 bp Feature: gene Location: 12270-13592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12723-13365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2723-1 3365 bp Feature: gene Location: 13895-15127 bp Feature: domain Description: YejR Location: 13922-15035 bp Feature: domain Description: YejR Location: 1 3922-1 5035 bp Feature: gene Location: 15175-16524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PSCyt1 (pfam07635), PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627), PSD2 (pfam07624), HXXSHH (pfam07586), RVT-Retrons, YejR (COG0523)

Seq: RECD01000227.1 (3578 bp)
Overview 1 RT 1: 628-3276 bp Neighborhood of RT #1 [628, 3404] Cas2_I_II_III Cas_Cas1 RVT-CRISPR GIIM Feature: gene Location: 628-1002 bp Feature: domain Description: Cas2_I_II_III Location: 736-946 bp Feature: domain Description: Cas2 _I_II_III Location: 736-946 bp Feature: gene Location: 1129-2226 bp Feature: domain Description: Cas_Cas1 Location: 1324-2113 bp Feature: domain Description: Cas_Cas1 Location: 132 4-2 113 bp Feature: gene Location: 2283-3404 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2454-3051 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 454-3051 bp Feature: domain Description: GIIM Note: maturase Location: 3102-3276 bp Feature: domain Description: GIIM Note: maturase Location: 3102 -32 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, GIIM (pfam08388)

Seq: RECD01000049.1 (2508 bp)
Overview 1 RT 1: 572-2288 bp Neighborhood of RT #1 [572, 2506] SMI1_KNR4 RVT-GII Feature: gene Location: 572-1048 bp Feature: domain Description: SMI1_KNR4 Location: 647-989 bp Feature: domain Description: SMI1_KNR4 Location: 647-989 bp Feature: gene Location: 1194-1442 bp Feature: gene Location: 1439-2506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMI1_KNR4 (smart00860), RVT-GII

Seq: RECD01000166.1 (49935 bp)
Overview 1 RT 1: 24919-35425 bp Neighborhood of RT #1 [24919, 35514] HEAT_2 HEAT_2 HEAT_2 Sialidase_non-viral Sialidase_non-viral PALP RVT-CRISPR-like PSCyt1 WD40 PSCyt2 PSD1 Feature: gene Location: 24919-28125 bp Feature: domain Description: HEAT_2 Location: 25297-25498 bp Feature: domain Description: HEAT_2 Location: 25297-254 98 bp Feature: domain Description: HEAT_2 Location: 25531-25681 bp Feature: domain Description: HEAT_2 Location: 25531-25681 bp Feature: domain Description: HEAT_2 Location: 25741-25921 bp Feature: domain Description: HEAT_2 Location: 2574 1-25921 bp Feature: domain Description: Sialidase_non-viral Location: 26023-26926 bp Feature: domain Description: Sialidase_non-viral Location: 26023-26926 bp Feature: domain Description: Sialidase_non-viral Location: 27118-28018 bp Feature: domain Description: Sialidase_non-viral Location: 27118-28018 bp Feature: gene Location: 28169-29260 bp Feature: domain Description: PALP Location: 28220-29156 bp Feature: domain Description: PALP Location: 28220-29156 bp Feature: gene Location: 29372-29521 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 29375-29498 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 29375-294 98 bp Feature: gene Location: 30070-32889 bp Feature: domain Description: PSCyt1 Location: 30217-30388 bp Feature: domain Description: PSCyt1 Location: 30217-30388 bp Feature: domain Description: WD40 Location: 30637-31291 bp Feature: domain Description: WD4 0 Location: 30637-31291 bp Feature: gene Location: 32902-35514 bp Feature: domain Description: PSCyt2 Location: 34003-34549 bp Feature: domain Description: PSCyt2 Location: 34 003-34 54 9 bp Feature: domain Description: PSD1 Location: 34705-35425 bp Feature: domain Description: PSD1 Location: 34 705-354 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), Sialidase_non-viral (cd15482), PALP (pfam00291), RVT-CRISPR, PSCyt1 (pfam07635), WD40 (smart00320), PSCyt2 (pfam07583), PSD1 (pfam07587)