myRT

myRT report for GCA_007732545.1_ASM773254v1

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Seq: REEX01000096.1 (22344 bp)
Overview 1 RT 1: 9524-15900 bp Neighborhood of RT #1 [9524, 15900] DUF5132 RVT_N RVT-GII GIIM McrA P-type_ATPase_HM Feature: gene Location: 9524-9850 bp Feature: domain Description: DUF5132 Location: 9653-9785 bp Feature: domain Description: DUF51 32 Location: 9653-9785 bp Feature: gene Location: 9924-10253 bp Feature: gene Location: 11157-12941 bp Feature: domain Description: RVT_N Location: 11223-11466 bp Feature: domain Description: RVT_N Location: 1 1 223-1 1 466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11511-12183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 51 1 -1 21 83 bp Feature: domain Description: GIIM Note: maturase Location: 12288-12495 bp Feature: domain Description: GIIM Note: maturase Location: 1 2288-1 2495 bp Feature: domain Description: McrA Location: 12651-12915 bp Feature: domain Description: McrA Location: 1 2651 -1 291 5 bp Feature: gene Location: 13103-15292 bp Feature: domain Description: P-type_ATPase_HM Location: 13496-15263 bp Feature: domain Description: P-type_ATPase_HM Location: 1 3496-1 5263 bp Feature: gene Location: 15289-15900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5132 (pfam17195), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), P-type_ATPase_HM (cd07553)

Seq: REEX01000153.1 (29333 bp)
Overview 1 RT 1: 17379-21379 bp Neighborhood of RT #1 [17379, 21831] PRK07459 RVT_N RVT-GII GIIM NAD_bind_1_Glu_DH Lys9 Feature: gene Location: 17379-17912 bp Feature: gene Location: 18011-18286 bp Feature: domain Description: PRK07459 Location: 18014-18263 bp Feature: domain Description: PRK07459 Location: 18014-182 63 bp Feature: gene Location: 18546-20042 bp Feature: domain Description: RVT_N Location: 18576-18822 bp Feature: domain Description: RVT_N Location: 18576-1882 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18864-19524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18864-1952 4 bp Feature: domain Description: GIIM Note: maturase Location: 19626-19863 bp Feature: domain Description: GIIM Note: maturase Location: 1962 6-19863 bp Feature: gene Location: 20123-20338 bp Feature: gene Location: 20812-21831 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 20869-21064 bp Feature: domain Description: NAD_bind_1_Glu_DH Location: 2 0869-2 1064 bp Feature: domain Description: Lys9 Location: 21097-21379 bp Feature: domain Description: Lys9 Location: 2 1097-2 1379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NAD_bind_1_Glu_DH (cd01076), Lys9 (COG1748)

Seq: REEX01000091.1 (53450 bp)
Overview 1 RT 1: 47475-52168 bp Neighborhood of RT #1 [47475, 52170] RVT_N RVT-GII GIIM McrA petB Feature: gene Location: 47475-47828 bp Feature: gene Location: 47901-48617 bp Feature: gene Location: 49359-51140 bp Feature: domain Description: RVT_N Location: 49425-49668 bp Feature: domain Description: RVT_N Location: 49425-49668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49713-50382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49713 -503 82 bp Feature: domain Description: GIIM Note: maturase Location: 50487-50694 bp Feature: domain Description: GIIM Note: maturase Location: 50487-50694 bp Feature: domain Description: McrA Location: 50829-51105 bp Feature: domain Description: McrA Location: 50829-51105 bp Feature: gene Location: 51164-51340 bp Feature: gene Location: 51502-52170 bp Feature: domain Description: petB Location: 51529-52168 bp Feature: domain Description: petB Location: 51529-52168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), petB (CHL00070)

Seq: REEX01000085.1 (38776 bp)
Overview 1 RT 1: 16171-22297 bp Neighborhood of RT #1 [16171, 22317] Dam RVT_N RVT-GII GIIM HNHc PotA PBP2_PotD_PotF_like Feature: gene Location: 16171-17016 bp Feature: domain Description: Dam Location: 16225-17014 bp Feature: domain Description: Dam Location: 16225-17014 bp Feature: gene Location: 17035-17175 bp Feature: gene Location: 18100-19866 bp Feature: domain Description: RVT_N Location: 18169-18412 bp Feature: domain Description: RVT_N Location: 18169-184 12 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18457-19126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 57-19126 bp Feature: domain Description: GIIM Note: maturase Location: 19231-19444 bp Feature: domain Description: GIIM Note: maturase Location: 19231-194 4 4 bp Feature: domain Description: HNHc Note: nucleases Location: 19675-19834 bp Feature: domain Description: HNHc Note: nucleases Location: 19675-19834 bp Feature: gene Location: 19992-21137 bp Feature: domain Description: PotA Location: 20043-21117 bp Feature: domain Description: PotA Location: 2004 3-21117 bp Feature: gene Location: 21184-22317 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 21352-22297 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 21352-22297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PotA (COG3842), PBP2_PotD_PotF_like (cd13590)

Seq: REEX01000070.1 (48990 bp)
Overview 1 RT 1: 12501-17377 bp Neighborhood of RT #1 [12501, 17424] COG3744 NagA RVT_N RVT-GII GIIM DUF2839 DUF1815 Feature: gene Location: 12501-12902 bp Feature: domain Description: COG3744 Location: 12510-12879 bp Feature: domain Description: COG3744 Location: 125 10-12879 bp Feature: gene Location: 12971-14134 bp Feature: domain Description: NagA Location: 13049-14039 bp Feature: domain Description: NagA Location: 13049-14039 bp Feature: gene Location: 14883-16376 bp Feature: domain Description: RVT_N Location: 14928-15174 bp Feature: domain Description: RVT_N Location: 14928-15 174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15258-15882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 25 8-15 882 bp Feature: domain Description: GIIM Note: maturase Location: 15981-16215 bp Feature: domain Description: GIIM Note: maturase Location: 15 981-16215 bp Feature: gene Location: 16478-16657 bp Feature: domain Description: DUF2839 Location: 16505-16646 bp Feature: domain Description: DUF2839 Location: 165 05 -16646 bp Feature: gene Location: 17080-17424 bp Feature: domain Description: DUF1815 Location: 17086-17377 bp Feature: domain Description: DUF1815 Location: 17086-17377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3744 (PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) ), NagA (COG1820), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2839 (pfam10999), DUF1815 (pfam08844)

Seq: REEX01000072.1 (13012 bp)
Overview 1 RT 1: 8539-12985 bp Neighborhood of RT #1 [8539, 13011] Trypsin_2 SLH trpD RVT_N RVT-GII GIIM McrA Feature: gene Location: 8539-9813 bp Feature: domain Description: Trypsin_2 Location: 8809-9316 bp Feature: domain Description: Trypsin_2 Location: 8809-9316 bp Feature: domain Description: SLH Location: 9535-9652 bp Feature: domain Description: SLH Location: 9535-96 52 bp Feature: gene Location: 10133-11206 bp Feature: domain Description: trpD Location: 10166-11198 bp Feature: domain Description: trpD Location: 1016 6 -11198 bp Feature: gene Location: 11341-13011 bp Feature: domain Description: RVT_N Location: 11344-11557 bp Feature: domain Description: RVT_N Location: 11344-11557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11602-12271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116 02-12271 bp Feature: domain Description: GIIM Note: maturase Location: 12376-12589 bp Feature: domain Description: GIIM Note: maturase Location: 12376 -12589 bp Feature: domain Description: McrA Location: 12739-12985 bp Feature: domain Description: McrA Location: 12739-12985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), SLH (pfam00395), trpD (TIGR01245), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: REEX01000172.1 (23321 bp)
Overview 1 RT 1: 19267-22415 bp Neighborhood of RT #1 [19267, 22495] Usp Usp argC RVT_N RVT-GII GIIM Feature: gene Location: 19267-20118 bp Feature: domain Description: Usp Location: 19270-19663 bp Feature: domain Description: Usp Location: 1927 0-19663 bp Feature: domain Description: Usp Location: 19690-20107 bp Feature: domain Description: Usp Location: 19690-20107 bp Feature: gene Location: 20167-21198 bp Feature: domain Description: argC Location: 20170-21196 bp Feature: domain Description: argC Location: 2017 0-21196 bp Feature: gene Location: 21323-22495 bp Feature: domain Description: RVT_N Location: 21431-21545 bp Feature: domain Description: RVT_N Location: 21431-21545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21842-22103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21842-22103 bp Feature: domain Description: GIIM Note: maturase Location: 22190-22415 bp Feature: domain Description: GIIM Note: maturase Location: 22190-22415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Usp (pfam00582), argC (TIGR01850), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: REEX01000086.1 (46748 bp)
Overview 1 RT 1: 91-4583 bp Neighborhood of RT #1 [91, 4621] RVT-CRISPR Cas1_I-II-III Cas1_I-II-III Cas1_I-II-III Feature: gene Location: 91-414 bp Feature: gene Location: 560-1246 bp Feature: gene Location: 1545-3530 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1752-2358 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1752-2358 bp Feature: domain Description: Cas1_I-II-III Location: 2535-3492 bp Feature: domain Description: Cas1_I-II-III Location: 2535-3492 bp Feature: gene Location: 3538-3735 bp Feature: gene Location: 3725-4621 bp Feature: domain Description: Cas1_I-II-III Location: 3737-4118 bp Feature: domain Description: Cas1_I-II-III Location: 3737-4118 bp Feature: domain Description: Cas1_I-II-III Location: 4265-4583 bp Feature: domain Description: Cas1_I-II-III Location: 4265-458 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)