myRT

myRT report for GCA_007827045.1_ASM782704v1

Download annotations/find similar RTs

Seq: RPFW01000065.1 (379 bp)
Overview 1 RT 1: 78-375 bp Neighborhood of RT #1 [78, 379] RVT-GII Feature: gene Location: 78-379 bp Ori: TVY97928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20-375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000002.1 (1327398 bp)
Overview 1 RT 1: 122-2257 bp Neighborhood of RT #1 [122, 2352] RVT-GII GIIM PRK06196 HTH_YyaN Feature: gene Location: 122-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125-308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 5-308 bp Feature: domain Description: GIIM Note: maturase Location: 389-620 bp Feature: domain Description: GIIM Note: maturase Location: 389-62 0 bp Feature: gene Location: 974-1921 bp Ori: TVZ04728.1 Feature: domain Description: PRK06196 Location: 986-1913 bp Feature: domain Description: PRK06196 Location: 986-1913 bp Feature: gene Location: 1918-2352 bp Ori: TVZ04729.1 Feature: domain Description: HTH_YyaN Location: 1921-2257 bp Feature: domain Description: HTH_YyaN Location: 192 1-2 2 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06196 (oxidoreductase; Provisional), HTH_YyaN (cd01109)

Seq: RPFW01000075.1 (266 bp)
Overview 1 RT 1: 36-126 bp Neighborhood of RT #1 [36, 227] RVT-GII Feature: gene Location: 36-227 bp Ori: TVY97815.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9-126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000076.1 (266 bp)
Overview 1 RT 1: 148-244 bp Neighborhood of RT #1 [148, 243] RVT-GII Feature: gene Location: 148-243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151-24 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000090.1 (248 bp)
Overview 1 RT 1: 1-220 bp Neighborhood of RT #1 [1, 226] RVT-GII Feature: gene Location: 1-226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000009.1 (373870 bp)
Overview 1 RT 1: 360840-365448 bp 2 RT 2: 370797-373768 bp Neighborhood of RT #1 [360840, 365480] Bile_Hydr_Trans BAAT_C DUF1707 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Neighborhood of RT #2 [370797, 373821] PinE Zn_ribbon_recom excise RVT-GII Feature: gene Location: 360840-362123 bp Ori: TVZ00494.1 Feature: domain Description: Bile_Hydr_Trans Location: 360987-361329 bp Feature: domain Description: Bile_Hydr_Trans Location: 36 0987-36 1329 bp Feature: domain Description: BAAT_C Location: 361542-362115 bp Feature: domain Description: BAAT_C Location: 36 1542-36 2115 bp Feature: gene Location: 362578-363279 bp Ori: TVZ00495.1 Feature: domain Description: DUF1707 Location: 362677-362833 bp Feature: domain Description: DUF1707 Location: 36 26 77-36 2833 bp Feature: gene Location: 363454-364031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363457-363598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 3457-36 3598 bp Feature: domain Description: GIIM Note: maturase Location: 363667-363892 bp Feature: domain Description: GIIM Note: maturase Location: 36 36 6 7-36 3892 bp Feature: gene Location: 364149-365116 bp Feature: domain Description: Phage_int_SAM_1 Location: 364185-364434 bp Feature: domain Description: Phage_int_SAM_1 Location: 36 4185-36 4434 bp Feature: domain Description: INT_RitC_C_like Location: 364521-364923 bp Feature: domain Description: INT_RitC_C_like Location: 36 4521-36 4923 bp Feature: gene Location: 365109-365480 bp Ori: TVZ00496.1 Feature: domain Description: INT_RitB_C_like Location: 365316-365448 bp Feature: domain Description: INT_RitB_C_like Location: 36 5316 -36 5448 bp Feature: gene Location: 370797-371147 bp Feature: gene Location: 371241-373403 bp Ori: TVZ00504.1 Feature: domain Description: PinE Location: 371286-371865 bp Feature: domain Description: PinE Location: 371286 -37186 5 bp Feature: domain Description: Zn_ribbon_recom Location: 372228-372393 bp Feature: domain Description: Zn_ribbon_recom Location: 372228-372393 bp Feature: domain Description: excise Location: 373083-373191 bp Feature: domain Description: excise Location: 373083-373191 bp Feature: gene Location: 373366-373821 bp Ori: TVZ00505.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373411-373768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373411-37376 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bile_Hydr_Trans (pfam04775), BAAT_C (pfam08840), DUF1707 (pfam08044), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), PinE (COG1961), Zn_ribbon_recom (pfam13408)
excise (TIGR01764)

Seq: RPFW01000077.1 (265 bp)
Overview 1 RT 1: 170-266 bp Neighborhood of RT #1 [170, 265] RVT-GII Feature: gene Location: 170-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173-266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 3-266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000091.1 (214 bp)
Overview 1 RT 1: 1-79 bp Neighborhood of RT #1 [1, 84] RVT-GII Feature: gene Location: 1-84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPFW01000006.1 (708174 bp)
Overview 1 RT 1: 123-3081 bp 2 RT 2: 438798-445234 bp 3 RT 3: 705429-708175 bp Neighborhood of RT #1 [123, 3092] RVT-GII GIIM PRK06209 Neighborhood of RT #2 [438798, 445234] HTH_29 HTH_IclR DDE_3 RVT_N RVT-GII GIIM Neighborhood of RT #3 [705429, 708174] PinE Zn_ribbon_recom excise RVT-GII Feature: gene Location: 123-1166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126-402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126-402 bp Feature: domain Description: GIIM Note: maturase Location: 462-693 bp Feature: domain Description: GIIM Note: maturase Location: 462-69 3 bp Feature: gene Location: 1242-1454 bp Feature: gene Location: 1776-3092 bp Ori: TVZ02028.1 Feature: domain Description: PRK06209 Location: 1812-3081 bp Feature: domain Description: PRK06209 Location: 1812-3081 bp Feature: gene Location: 438798-439265 bp Feature: gene Location: 439293-440141 bp Feature: domain Description: HTH_29 Location: 439350-439536 bp Feature: domain Description: HTH_29 Location: 439 350-439 536 bp Feature: domain Description: HTH_IclR Location: 439590-439650 bp Feature: domain Description: HTH_IclR Location: 439 59 0-439 650 bp Feature: domain Description: DDE_3 Location: 439776-440139 bp Feature: domain Description: DDE_3 Location: 439 776-440139 bp Feature: gene Location: 440819-442561 bp Ori: TVZ01814.1 Gene: ltrA Feature: domain Description: RVT_N Location: 440852-441089 bp Feature: domain Description: RVT_N Location: 440852-441089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441149-441797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441149 -44179 7 bp Feature: domain Description: GIIM Note: maturase Location: 441857-442088 bp Feature: domain Description: GIIM Note: maturase Location: 441857-442088 bp Feature: gene Location: 442637-442837 bp Feature: gene Location: 444623-445234 bp Feature: gene Location: 705429-705782 bp Feature: gene Location: 705873-707972 bp Ori: TVZ02027.1 Feature: domain Description: PinE Location: 705918-706533 bp Feature: domain Description: PinE Location: 7059 18-706533 bp Feature: domain Description: Zn_ribbon_recom Location: 706860-707025 bp Feature: domain Description: Zn_ribbon_recom Location: 706860-707025 bp Feature: domain Description: excise Location: 707712-707826 bp Feature: domain Description: excise Location: 707712-707826 bp Feature: gene Location: 708010-708174 bp Ori: TVZ02094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708013-708175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708013-708175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06209 (glutamate-1-semialdehyde 2,1-aminomutase; Provisional), HTH_29 (pfam13551), HTH_IclR (pfam09339), DDE_3 (pfam13358), RVT_N (pfam13655), PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764)

Seq: RPFW01000001.1 (1889528 bp)
Overview 1 RT 1: 283578-292228 bp 2 RT 2: 296263-300201 bp Neighborhood of RT #1 [283578, 292878] RVT-GII Intron_maturas2 HNHc Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII PinE Zn_ribbon_recom Neighborhood of RT #2 [296263, 300266] HTH_17 HTH_17 RVT-GII HTH_Tnp_4 DDE_Tnp_4 recX Feature: gene Location: 283578-283928 bp Feature: gene Location: 284043-284627 bp Feature: gene Location: 285227-286378 bp Ori: TVZ06096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285230-285644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285230-285644 bp Feature: domain Description: Intron_maturas2 Location: 285767-285980 bp Feature: domain Description: Intron_maturas2 Location: 285767-285980 bp Feature: domain Description: HNHc Note: nucleases Location: 286148-286334 bp Feature: domain Description: HNHc Note: nucleases Location: 286148-286334 bp Feature: gene Location: 286915-287895 bp Ori: TVZ07367.1 Feature: domain Description: Phage_int_SAM_1 Location: 287011-287239 bp Feature: domain Description: Phage_int_SAM_1 Location: 287011-287239 bp Feature: domain Description: INT_RitA_C_like Location: 287323-287860 bp Feature: domain Description: INT_RitA_C_like Location: 287323-287860 bp Feature: gene Location: 287910-288803 bp Feature: domain Description: INT_RitB_C_like Location: 288231-288795 bp Feature: domain Description: INT_RitB_C_like Location: 288231-288795 bp Feature: gene Location: 288870-289874 bp Ori: TVZ07368.1 Feature: domain Description: Phage_int_SAM_1 Location: 288915-289161 bp Feature: domain Description: Phage_int_SAM_1 Location: 288915-289161 bp Feature: domain Description: INT_RitC_C_like Location: 289245-289794 bp Feature: domain Description: INT_RitC_C_like Location: 289245-289794 bp Feature: gene Location: 289996-290145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289999-290146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289999-290146 bp Feature: gene Location: 290364-290558 bp Feature: gene Location: 291040-292878 bp Ori: TVZ06098.1 Feature: domain Description: PinE Location: 291082-291655 bp Feature: domain Description: PinE Location: 2910 82-291655 bp Feature: domain Description: Zn_ribbon_recom Location: 292051-292228 bp Feature: domain Description: Zn_ribbon_recom Location: 292051-292228 bp Feature: gene Location: 296263-296682 bp Feature: gene Location: 296761-297216 bp Feature: domain Description: HTH_17 Location: 296890-297016 bp Feature: domain Description: HTH_17 Location: 296890-297016 bp Feature: domain Description: HTH_17 Location: 297091-297184 bp Feature: domain Description: HTH_17 Location: 297091-297184 bp Feature: gene Location: 297226-297741 bp Ori: TVZ06103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297487-297727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297487-297727 bp Feature: gene Location: 298361-299119 bp Ori: TVZ06104.1 Feature: domain Description: HTH_Tnp_4 Location: 298463-298616 bp Feature: domain Description: HTH_Tnp_4 Location: 298463-298616 bp Feature: domain Description: DDE_Tnp_4 Location: 298673-299096 bp Feature: domain Description: DDE_Tnp_4 Location: 298673-299096 bp Feature: gene Location: 299697-300266 bp Ori: TVZ06105.1 Feature: domain Description: recX Location: 299742-300201 bp Feature: domain Description: recX Location: 299742-300201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)
HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), recX (PRK14137)