myRT

myRT report for GCA_007827505.1_ASM782750v1

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Seq: VISO01000001.1 (834182 bp)
Overview 1 RT 1: 33015-36206 bp 2 RT 2: 88142-91045 bp 3 RT 3: 140714-144831 bp 4 RT 4: 308447-312258 bp Neighborhood of RT #1 [33015, 36763] RVT-GII RVT-GII DDE_Tnp_1_5 Neighborhood of RT #2 [88142, 91083] Rve RVT-GII GIIM PBP2_DntR_like_1 Neighborhood of RT #3 [140714, 144872] DDE_Tnp_1_5 RVT-GII Rve ICE_VC0181 Neighborhood of RT #4 [308447, 312263] DDE_Tnp_IS66 group_II_RT_mat RVT-GII GIIM ectoine_eutC Feature: gene Location: 33015-33356 bp Feature: gene Location: 33683-33952 bp Feature: gene Location: 33951-34358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34092-34359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34092-34359 bp Feature: gene Location: 34358-35158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34364-34781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34364-34781 bp Feature: gene Location: 35332-35652 bp Feature: gene Location: 35774-36763 bp Ori: TVZ74721.1 Feature: domain Description: DDE_Tnp_1_5 Location: 35870-36206 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 35870-36206 bp Feature: gene Location: 88142-88603 bp Feature: domain Description: Rve Location: 88148-88547 bp Feature: domain Description: Rve Location: 881 48-88547 bp Feature: gene Location: 88666-89925 bp Ori: TVZ74760.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88870-89527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88870-89527 bp Feature: domain Description: GIIM Note: maturase Location: 89608-89839 bp Feature: domain Description: GIIM Note: maturase Location: 89608-89839 bp Feature: gene Location: 89918-90295 bp Feature: gene Location: 90859-91083 bp Feature: domain Description: PBP2_DntR_like_1 Location: 90928-91045 bp Feature: domain Description: PBP2_DntR_like_1 Location: 90928-91 045 bp Feature: gene Location: 140714-140893 bp Feature: gene Location: 141129-142118 bp Feature: domain Description: DDE_Tnp_1_5 Location: 141225-141561 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 41 225-1 41 561 bp Feature: gene Location: 142160-142672 bp Ori: TVZ74797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142364-142655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42364-1 42655 bp Feature: gene Location: 143157-143453 bp Ori: TVZ74798.1 Feature: domain Description: Rve Location: 143178-143400 bp Feature: domain Description: Rve Location: 1 431 78-1 43400 bp Feature: gene Location: 144408-144872 bp Ori: TVZ74799.1 Feature: domain Description: ICE_VC0181 Location: 144507-144831 bp Feature: domain Description: ICE_VC01 81 Location: 1 44507-1 44831 bp Feature: gene Location: 308447-308554 bp Feature: domain Description: DDE_Tnp_IS66 Location: 308453-308531 bp Feature: domain Description: DDE_Tnp_IS66 Location: 308453-308531 bp Feature: gene Location: 309995-310207 bp Ori: TVZ74945.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 310031-310208 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 31 0031 -31 0208 bp Feature: gene Location: 308949-309995 bp Ori: TVZ74945.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308952-309597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308952-309597 bp Feature: domain Description: GIIM Note: maturase Location: 309678-309897 bp Feature: domain Description: GIIM Note: maturase Location: 309678-309897 bp Feature: gene Location: 310221-310493 bp Feature: gene Location: 311271-312263 bp Ori: TVZ74947.1 Feature: domain Description: ectoine_eutC Location: 311283-312258 bp Feature: domain Description: ectoine_eutC Location: 31 1 283-31 2258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_5 (pfam13737), Rve (COG3316), GIIM (pfam08388), PBP2_DntR_like_1 (cd08460), ICE_VC0181 (TIGR02256), DDE_Tnp_IS66 (pfam03050), group_II_RT_mat (TIGR04416), ectoine_eutC (TIGR02992)

Seq: VISO01000003.1 (4253754 bp)
Overview 1 RT 1: 139224-145603 bp 2 RT 2: 1548808-1552562 bp 3 RT 3: 3370200-3377665 bp Neighborhood of RT #1 [139224, 145603] Patatin_and_cPLA2 RVT-Retrons TIR_2 TIR_2 Neighborhood of RT #2 [1548808, 1552562] PQQ_ABC_repeats PQQ_ABC_repeats Phytase-like RhaT RVT-GII RVT-GII GIIM Neighborhood of RT #3 [3370200, 3377676] YbjD SLATT_5 RVT-UG12 Lactonase Feature: gene Location: 139224-139490 bp Feature: gene Location: 139583-142318 bp Ori: TVZ63093.1 Feature: domain Description: Patatin_and_cPLA2 Location: 140312-140492 bp Feature: domain Description: Patatin_and_cPLA2 Location: 140312 -140492 bp Feature: gene Location: 142646-144154 bp Ori: TVZ63094.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142805-143414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142 805-143414 bp Feature: domain Description: TIR_2 Location: 143720-144050 bp Feature: domain Description: TIR_2 Location: 14372 0-144050 bp Feature: gene Location: 144200-145051 bp Ori: TVZ63095.1 Feature: domain Description: TIR_2 Location: 144656-144977 bp Feature: domain Description: TIR_2 Location: 144656-144977 bp Feature: gene Location: 145142-145603 bp Feature: gene Location: 1548808-1551006 bp Ori: TVZ64446.1 Feature: domain Description: PQQ_ABC_repeats Location: 1549177-1549297 bp Feature: domain Description: PQQ_ABC_repeats Location: 1549177-15492 97 bp Feature: domain Description: PQQ_ABC_repeats Location: 1549474-1549855 bp Feature: domain Description: PQQ_ABC_repeats Location: 1549474-1549855 bp Feature: domain Description: Phytase-like Location: 1550152-1550944 bp Feature: domain Description: Phytase-like Location: 1550152 -1550944 bp Feature: gene Location: 1551101-1552000 bp Ori: TVZ64447.1 Feature: domain Description: RhaT Location: 1551134-1551974 bp Feature: domain Description: RhaT Location: 1551134-1551974 bp Feature: gene Location: 1553028-1553762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553367-1553763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553367-1553763 bp Feature: gene Location: 1552735-1553028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552738-1552960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552 738-1552 960 bp Feature: gene Location: 1552562-1552732 bp Feature: domain Description: GIIM Note: maturase Location: 1552574-1552733 bp Feature: domain Description: GIIM Note: maturase Location: 1552 574-1552 733 bp Feature: gene Location: 1552491-1552562 bp Feature: gene Location: 3370200-3371987 bp Ori: TVZ66173.1 Feature: domain Description: YbjD Location: 3370203-3371982 bp Feature: domain Description: YbjD Location: 33702 03-3371982 bp Feature: gene Location: 3372486-3373157 bp Ori: TVZ66174.1 Feature: domain Description: SLATT_5 Location: 3372555-3373083 bp Feature: domain Description: SLATT_5 Location: 3372 555-3373083 bp Feature: gene Location: 3373167-3374855 bp Ori: TVZ66175.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3373596-3373995 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3373596-3373995 bp Feature: gene Location: 3375849-3376427 bp Feature: gene Location: 3376624-3377676 bp Ori: TVZ66177.1 Feature: domain Description: Lactonase Location: 3376639-3377665 bp Feature: domain Description: Lactonase Location: 3376639-3377665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Patatin_and_cPLA2 (cl11396), RVT-Retrons, TIR_2 (pfam13676), PQQ_ABC_repeats (TIGR03866), Phytase-like (pfam13449), RhaT (TIGR00776), RVT-GII, GIIM (pfam08388), YbjD (COG3593), SLATT_5 (pfam18160)
RVT-UG12, Lactonase (pfam10282)