myRT

myRT report for GCA_007827695.1_ASM782769v1

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Seq: VITA01000003.1 Sinorhizobium medicae strain USDA1037 Ga0310605_103, whole genome shotgun sequence (436004 bp)
Overview 1 RT 1: 415967-420197 bp Neighborhood of RT #1 [415967, 420208] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc ArdC Feature: gene Location: 415967-416959 bp Feature: domain Description: Phage_int_SAM_1 Location: 416009-416252 bp Feature: domain Description: Phage_int_SAM_1 Location: 41 6009-41 6252 bp Feature: domain Description: INT_RitC_C_like Location: 416345-416885 bp Feature: domain Description: INT_RitC_C_like Location: 41 6345-41 6885 bp Feature: gene Location: 417075-417230 bp Feature: gene Location: 417302-418960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417311-418148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 731 1 -41 81 48 bp Feature: domain Description: Intron_maturas2 Location: 418229-418517 bp Feature: domain Description: Intron_maturas2 Location: 41 8229-41 851 7 bp Feature: domain Description: HNHc Note: nucleases Location: 418682-418841 bp Feature: domain Description: HNHc Note: nucleases Location: 41 8682-41 8841 bp Feature: gene Location: 419451-419801 bp Feature: gene Location: 419822-420208 bp Feature: domain Description: ArdC Location: 419849-420197 bp Feature: domain Description: ArdC Location: 41 9849-4201 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227)

Seq: VITA01000024.1 Sinorhizobium medicae strain USDA1037 Ga0310605_124, whole genome shotgun sequence (67379 bp)
Overview 1 RT 1: 62993-66750 bp Neighborhood of RT #1 [62993, 66830] PyocinActivator COG3183 RVT-Retrons Trypsin_2 Feature: gene Location: 62993-63286 bp Feature: domain Description: PyocinActivator Location: 63035-63257 bp Feature: domain Description: PyocinActivator Location: 63035-632 57 bp Feature: gene Location: 63447-64529 bp Feature: domain Description: COG3183 Location: 64206-64503 bp Feature: domain Description: COG3183 Location: 642 06-64503 bp Feature: gene Location: 65652-66830 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65658-65931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65658-65931 bp Feature: domain Description: Trypsin_2 Location: 66315-66750 bp Feature: domain Description: Trypsin_2 Location: 66315-66750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyocinActivator (pfam11112), COG3183 (Predicted restriction endonuclease, HNH family ), RVT-Retrons, Trypsin_2 (pfam13365)