myRT

myRT report for GCA_007828335.1_ASM782833v1

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Seq: VIUN01000002.1 Pseudomonas sp. SJZ103 Ga0314254_102, whole genome shotgun sequence (634670 bp)
Overview 1 RT 1: 29368-37589 bp Neighborhood of RT #1 [29368, 37639] COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 29368-30393 bp Feature: domain Description: COG3178 Location: 29383-30379 bp Feature: domain Description: COG31 78 Location: 29383-30379 bp Feature: gene Location: 30699-30857 bp Feature: gene Location: 31698-33398 bp Feature: domain Description: RVT_N Location: 31755-31998 bp Feature: domain Description: RVT_N Location: 31 755-31 998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32043-32679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32043-32679 bp Feature: domain Description: GIIM Note: maturase Location: 32730-32964 bp Feature: domain Description: GIIM Note: maturase Location: 32730-32964 bp Feature: domain Description: HNH Note: nucleases Location: 33216-33354 bp Feature: domain Description: HNH Note: nucleases Location: 3321 6-33354 bp Feature: gene Location: 33550-36324 bp Feature: domain Description: LptD Location: 33811-36307 bp Feature: domain Description: LptD Location: 3381 1 -36307 bp Feature: gene Location: 36299-37639 bp Feature: domain Description: PRK10770 Location: 36383-37589 bp Feature: domain Description: PRK1 0770 Location: 36383-37589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: VIUN01000015.1 Pseudomonas sp. SJZ103 Ga0314254_115, whole genome shotgun sequence (166525 bp)
Overview 1 RT 1: 109918-114084 bp Neighborhood of RT #1 [109918, 114140] RVT-GII RVT-GII HTH_ARSR MFS_YcxA_like Feature: gene Location: 109918-110235 bp Feature: gene Location: 110482-110634 bp Feature: gene Location: 110742-111119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110766-111114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110766-111114 bp Feature: gene Location: 111173-111997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111887-111995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111887-111995 bp Feature: gene Location: 112124-112819 bp Feature: domain Description: HTH_ARSR Location: 112169-112388 bp Feature: domain Description: HTH_ARSR Location: 112 169-112 388 bp Feature: gene Location: 112875-114140 bp Feature: domain Description: MFS_YcxA_like Location: 112920-114084 bp Feature: domain Description: MFS_YcxA_like Location: 112 92 0-114084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_ARSR (smart00418), MFS_YcxA_like (cd17355)