myRT

myRT report for GCA_007830265.1_ASM783026v1

Download annotations/find similar RTs

Seq: VLKE01000001.1 Micromonospora olivasterospora strain DSM 43868 JD77DRAFT_unitig_0_quiver.1, whole genome shotgun sequence (6945737 bp)
Overview 1 RT 1: 311878-316356 bp 2 RT 2: 393891-407579 bp 3 RT 3: 2305285-2309449 bp 4 RT 4: 2923989-2934023 bp 5 RT 5: 5695389-5701021 bp 6 RT 6: 6717721-6721488 bp Neighborhood of RT #1 [311878, 316391] 4OH_2_O_val_ald DDE_3 RVT-GII ACAD ACAD Neighborhood of RT #2 [393891, 407611] RVT-GII GIIM M20_Acy1-like Tas Neighborhood of RT #3 [2305285, 2309466] PRK07209 RVT-GII GIIM FepC FepG Neighborhood of RT #4 [2923989, 2934023] DDE_Tnp_1_6 InsE RVT-GII Nterm_IS4 DDE_Tnp_1 IstB_IS21 RVT-GII GIIM DUF772 DDE_Tnp_1_6 Neighborhood of RT #5 [5695389, 5701021] PHA02517 RVT-GII GIIM Transposase_mut Neighborhood of RT #6 [6717721, 6721508] Phage_int_SAM_1 INT_RitC_C_like INT_RitC_C_like RVT_N RVT-GII InsE pcaR_pcaU Feature: gene Location: 311878-312900 bp Feature: domain Description: 4OH_2_O_val_ald Location: 311887-312877 bp Feature: domain Description: 4OH_2_O_val_ald Location: 31 1 887-31 2877 bp Feature: gene Location: 313094-313342 bp Feature: domain Description: DDE_3 Location: 313103-313211 bp Feature: domain Description: DDE_3 Location: 31 31 03-31 321 1 bp Feature: gene Location: 313669-313935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313672-313927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 3672-31 3927 bp Feature: gene Location: 314119-315189 bp Feature: domain Description: ACAD Location: 314134-315166 bp Feature: domain Description: ACAD Location: 31 41 34-31 51 66 bp Feature: gene Location: 315213-316391 bp Feature: domain Description: ACAD Location: 315288-316356 bp Feature: domain Description: ACAD Location: 31 5288-31 6356 bp Feature: gene Location: 393891-402233 bp Feature: gene Location: 402634-402870 bp Feature: gene Location: 403435-405162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404212-404890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40421 2-404890 bp Feature: domain Description: GIIM Note: maturase Location: 404959-405157 bp Feature: domain Description: GIIM Note: maturase Location: 404959-4051 57 bp Feature: gene Location: 405360-406616 bp Feature: domain Description: M20_Acy1-like Location: 405450-406590 bp Feature: domain Description: M20_Acy1 -like Location: 405450-406590 bp Feature: gene Location: 406613-407611 bp Feature: domain Description: Tas Location: 406616-407579 bp Feature: domain Description: Tas Location: 40661 6-407579 bp Feature: gene Location: 2305285-2306280 bp Feature: domain Description: PRK07209 Location: 2305318-2306248 bp Feature: domain Description: PRK07209 Location: 230531 8-2306248 bp Feature: gene Location: 2306306-2306458 bp Feature: gene Location: 2306704-2307237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2306740-2306914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2306740-230691 4 bp Feature: domain Description: GIIM Note: maturase Location: 2306983-2307085 bp Feature: domain Description: GIIM Note: maturase Location: 2306983-2307085 bp Feature: gene Location: 2307704-2308489 bp Feature: domain Description: FepC Location: 2307716-2308472 bp Feature: domain Description: FepC Location: 230771 6-2308472 bp Feature: gene Location: 2308486-2309466 bp Feature: domain Description: FepG Location: 2308489-2309449 bp Feature: domain Description: FepG Location: 2308489-2309449 bp Feature: gene Location: 2923989-2925002 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2924556-2924925 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 2924556-2924925 bp Feature: gene Location: 2925118-2925429 bp Feature: domain Description: InsE Location: 2925133-2925421 bp Feature: domain Description: InsE Location: 29251 33-2925421 bp Feature: gene Location: 2926053-2926934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2926374-2926824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2926374-2926824 bp Feature: gene Location: 2927772-2929178 bp Feature: domain Description: Nterm_IS4 Location: 2927835-2928111 bp Feature: domain Description: Nterm_IS4 Location: 2927835-29281 1 1 bp Feature: domain Description: DDE_Tnp_1 Location: 2928168-2928831 bp Feature: domain Description: DDE_Tnp_1 Location: 29281 68-2928831 bp Feature: gene Location: 2929292-2929957 bp Feature: gene Location: 2930062-2930715 bp Feature: domain Description: IstB_IS21 Location: 2930125-2930653 bp Feature: domain Description: IstB_IS21 Location: 29301 25-2930653 bp Feature: gene Location: 2931108-2931668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2931120-2931249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2931 1 20-2931 249 bp Feature: domain Description: GIIM Note: maturase Location: 2931321-2931552 bp Feature: domain Description: GIIM Note: maturase Location: 2931 321 -2931 552 bp Feature: gene Location: 2931804-2933546 bp Feature: domain Description: DUF772 Location: 2931963-2932176 bp Feature: domain Description: DUF772 Location: 2931 963-29321 76 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2933100-2933469 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 29331 00-2933469 bp Feature: gene Location: 2933772-2934023 bp Feature: gene Location: 5695389-5696018 bp Feature: domain Description: PHA02517 Location: 5695392-5695956 bp Feature: domain Description: PHA0251 7 Location: 5695392-5695956 bp Feature: gene Location: 5696169-5696324 bp Feature: gene Location: 5696548-5698029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5696872-5697556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5696872-5697556 bp Feature: domain Description: GIIM Note: maturase Location: 5697625-5697859 bp Feature: domain Description: GIIM Note: maturase Location: 5697625-5697859 bp Feature: gene Location: 5698223-5699464 bp Feature: domain Description: Transposase_mut Location: 5698274-5699363 bp Feature: domain Description: Transposase_mut Location: 5698274-5699363 bp Feature: gene Location: 5700239-5701021 bp Feature: gene Location: 6717721-6718446 bp Feature: domain Description: Phage_int_SAM_1 Location: 6717769-6718006 bp Feature: domain Description: Phage_int_SAM_1 Location: 671 7769-671 8006 bp Feature: domain Description: INT_RitC_C_like Location: 6718096-6718444 bp Feature: domain Description: INT_RitC_C_like Location: 671 8096-671 8444 bp Feature: gene Location: 6718520-6718726 bp Feature: domain Description: INT_RitC_C_like Location: 6718523-6718646 bp Feature: domain Description: INT_RitC_C_like Location: 671 8523-671 8646 bp Feature: gene Location: 6718741-6719577 bp Feature: domain Description: RVT_N Location: 6718798-6718993 bp Feature: domain Description: RVT_N Location: 671 8798-671 8993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6719083-6719479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 9083-671 9479 bp Feature: gene Location: 6720181-6720492 bp Feature: domain Description: InsE Location: 6720196-6720484 bp Feature: domain Description: InsE Location: 67201 96-6720484 bp Feature: gene Location: 6720723-6721508 bp Feature: domain Description: pcaR_pcaU Location: 6720750-6721488 bp Feature: domain Description: pcaR_pcaU Location: 6720750-6721 488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 4OH_2_O_val_ald (TIGR03217), DDE_3 (pfam13358), RVT-GII, ACAD (cl09933), GIIM (pfam08388), M20_Acy1-like (cd08660), Tas (COG0667), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), FepC (COG1120), FepG (COG4779)
DDE_Tnp_1_6 (pfam13751), InsE (COG2963), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), IstB_IS21 (pfam01695), DUF772 (pfam05598), PHA02517 (putative transposase OrfB; Reviewed), Transposase_mut (pfam00872), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)
RVT_N (pfam13655), pcaR_pcaU (TIGR02431)