myRT

myRT report for GCA_007830365.1_ASM783036v1

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Seq: VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence (5542079 bp)
Overview 1 RT 1: 491677-495597 bp 2 RT 2: 1976745-1983100 bp 3 RT 3: 2190970-2196130 bp 4 RT 4: 2441723-2448757 bp 5 RT 5: 2830966-2838483 bp 6 RT 6: 4121394-4130212 bp 7 RT 7: 4144098-4150815 bp 8 RT 8: 4838735-4842905 bp 9 RT 9: 5403822-5408625 bp Neighborhood of RT #1 [491677, 496043] TIGR04076 RVT_N RVT-GII GIIM HTH_XRE DUF3102 Neighborhood of RT #2 [1976745, 1983108] ligA RVT-GII GIIM PRK14869 Neighborhood of RT #3 [2190970, 2196144] PRK05788 CobM RVT-GII GIIM Precorrin_2_C20_MT Neighborhood of RT #4 [2441723, 2448762] PRK12342 PRK03525 RVT-GII Intron_maturas2 MFS_MMR_MDR_like PRK06688 Neighborhood of RT #5 [2830966, 2838506] COG3379 COG3379 Tar RVT-GII GIIM PBP2_Bug_TTT Neighborhood of RT #6 [4121394, 4130212] RVT-GII GIIM GIIM DUF3852 RVT-GII Neighborhood of RT #7 [4144098, 4151378] MobL RVT-GII HNHc MobL TPR TPR TPR dnaG DUF3991 Toprim_2 Neighborhood of RT #8 [4838735, 4842913] RVT-GII GIIM SpoU Neighborhood of RT #9 [5403822, 5408639] PRK05362 RVT-GII GIIM PNP-EcPNPII_like Feature: gene Location: 491677-491991 bp Feature: domain Description: TIGR04076 Location: 491680-491986 bp Feature: domain Description: TIGR04076 Location: 491 680-491 986 bp Feature: gene Location: 492059-492385 bp Feature: gene Location: 492333-494036 bp Feature: RT Description: RVT_N Location: 492435-492678 bp Feature: RT Description: RVT_N Location: 492435-492678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492723-493383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492723-493383 bp Feature: domain Description: GIIM Note: maturase Location: 493449-493671 bp Feature: domain Description: GIIM Note: maturase Location: 493449-493671 bp Feature: gene Location: 494727-494978 bp Feature: domain Description: HTH_XRE Location: 494784-494961 bp Feature: domain Description: HTH_XRE Location: 494784-494961 bp Feature: gene Location: 495189-496043 bp Feature: domain Description: DUF3102 Location: 495213-495597 bp Feature: domain Description: DUF31 02 Location: 49521 3-495597 bp Feature: gene Location: 1976745-1978724 bp Feature: domain Description: ligA Location: 1976754-1978719 bp Feature: domain Description: ligA Location: 1 976754-1 97871 9 bp Feature: gene Location: 1979103-1979285 bp Feature: gene Location: 1979368-1980777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1979722-1980340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 979722-1 980340 bp Feature: domain Description: GIIM Note: maturase Location: 1980391-1980619 bp Feature: domain Description: GIIM Note: maturase Location: 1 980391 -1 98061 9 bp Feature: gene Location: 1981190-1981435 bp Feature: gene Location: 1981474-1983108 bp Feature: domain Description: PRK14869 Location: 1981477-1983100 bp Feature: domain Description: PRK1 4869 Location: 1 981 477-1 9831 00 bp Feature: gene Location: 2190970-2192109 bp Feature: domain Description: PRK05788 Location: 2190973-2192095 bp Feature: domain Description: PRK05788 Location: 21 90973-21 92095 bp Feature: gene Location: 2192106-2192900 bp Feature: domain Description: CobM Location: 2192148-2192889 bp Feature: domain Description: CobM Location: 21 921 48-21 92889 bp Feature: gene Location: 2193358-2194767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193712-2194330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9371 2-21 94330 bp Feature: domain Description: GIIM Note: maturase Location: 2194381-2194606 bp Feature: domain Description: GIIM Note: maturase Location: 21 94381 -21 94606 bp Feature: gene Location: 2194843-2195073 bp Feature: gene Location: 2195401-2196144 bp Feature: domain Description: Precorrin_2_C20_MT Location: 2195464-2196130 bp Feature: domain Description: Precorrin_2_C20_MT Location: 21 95464-21 961 30 bp Feature: gene Location: 2441723-2442493 bp Feature: domain Description: PRK12342 Location: 2441726-2442488 bp Feature: domain Description: PRK1 2342 Location: 2441 726-2442488 bp Feature: gene Location: 2442544-2443758 bp Feature: domain Description: PRK03525 Location: 2442550-2443753 bp Feature: domain Description: PRK03525 Location: 2442550-2443753 bp Feature: gene Location: 2444268-2446043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444541-2445333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444541 -2445333 bp Feature: domain Description: Intron_maturas2 Location: 2445414-2445705 bp Feature: domain Description: Intron_maturas2 Location: 244541 4-2445705 bp Feature: gene Location: 2446386-2447981 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2446458-2447928 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2446458-2447928 bp Feature: gene Location: 2447995-2448762 bp Feature: domain Description: PRK06688 Location: 2448013-2448757 bp Feature: domain Description: PRK06688 Location: 244801 3-2448757 bp Feature: gene Location: 2830966-2833011 bp Feature: domain Description: COG3379 Location: 2830990-2831335 bp Feature: domain Description: COG3379 Location: 2830990-2831 335 bp Feature: domain Description: COG3379 Location: 2832148-2832985 bp Feature: domain Description: COG3379 Location: 28321 48-2832985 bp Feature: gene Location: 2833285-2835018 bp Feature: domain Description: Tar Location: 2833654-2835016 bp Feature: domain Description: Tar Location: 2833654-283501 6 bp Feature: gene Location: 2835353-2836762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835707-2836325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835707-2836325 bp Feature: domain Description: GIIM Note: maturase Location: 2836376-2836604 bp Feature: domain Description: GIIM Note: maturase Location: 2836376-2836604 bp Feature: gene Location: 2836837-2837067 bp Feature: gene Location: 2837472-2838506 bp Feature: domain Description: PBP2_Bug_TTT Location: 2837610-2838483 bp Feature: domain Description: PBP2_Bug_TTT Location: 283761 0-2838483 bp Feature: gene Location: 4121394-4121945 bp Feature: gene Location: 4121987-4122592 bp Feature: gene Location: 4122710-4124242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4123031-4123655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 23031 -41 23655 bp Feature: domain Description: GIIM Note: maturase Location: 4123730-4123844 bp Feature: domain Description: GIIM Note: maturase Location: 41 23730-41 23844 bp Feature: domain Description: GIIM Note: maturase Location: 4123919-4124015 bp Feature: domain Description: GIIM Note: maturase Location: 41 2391 9-41 2401 5 bp Feature: gene Location: 4124410-4124637 bp Feature: gene Location: 4124847-4126577 bp Feature: gene Location: 4126662-4126937 bp Feature: domain Description: DUF3852 Location: 4126674-4126926 bp Feature: domain Description: DUF3852 Location: 41 26674-41 26926 bp Feature: gene Location: 4127392-4127541 bp Feature: gene Location: 4127656-4129536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4127980-4128706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 27980-41 28706 bp Feature: gene Location: 4129562-4129783 bp Feature: gene Location: 4129865-4130212 bp Feature: gene Location: 4144098-4144709 bp Feature: domain Description: MobL Location: 4144101-4144683 bp Feature: domain Description: MobL Location: 41 441 01 -41 44683 bp Feature: gene Location: 4145106-4145378 bp Feature: gene Location: 4145447-4147363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4145765-4146491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 45765-41 46491 bp Feature: domain Description: HNHc Note: nucleases Location: 4147070-4147238 bp Feature: domain Description: HNHc Note: nucleases Location: 41 47070-41 47238 bp Feature: gene Location: 4147483-4149777 bp Feature: domain Description: MobL Location: 4147510-4147972 bp Feature: domain Description: MobL Location: 41 4751 0-41 47972 bp Feature: domain Description: TPR Location: 4148260-4148398 bp Feature: domain Description: TPR Location: 41 48260-41 48398 bp Feature: domain Description: TPR Location: 4148455-4149016 bp Feature: domain Description: TPR Location: 41 48455-41 4901 6 bp Feature: domain Description: TPR Location: 4149121-4149565 bp Feature: domain Description: TPR Location: 41 491 21 -41 49565 bp Feature: gene Location: 4149945-4151378 bp Feature: domain Description: dnaG Location: 4150116-4150257 bp Feature: domain Description: dnaG Location: 41 501 1 6-41 50257 bp Feature: domain Description: DUF3991 Location: 4150302-4150524 bp Feature: domain Description: DUF3991 Location: 41 50302-41 50524 bp Feature: domain Description: Toprim_2 Location: 4150542-4150815 bp Feature: domain Description: Toprim_2 Location: 41 50542-41 5081 5 bp Feature: gene Location: 4838735-4839508 bp Feature: gene Location: 4839544-4839981 bp Feature: gene Location: 4840530-4841663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4840623-4841301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4840623-4841 301 bp Feature: domain Description: GIIM Note: maturase Location: 4841361-4841583 bp Feature: domain Description: GIIM Note: maturase Location: 4841 361 -4841 583 bp Feature: gene Location: 4841778-4841918 bp Feature: gene Location: 4842086-4842913 bp Feature: domain Description: SpoU Location: 4842188-4842905 bp Feature: domain Description: SpoU Location: 48421 88-4842905 bp Feature: gene Location: 5403822-5404988 bp Feature: domain Description: PRK05362 Location: 5403825-5404980 bp Feature: domain Description: PRK05362 Location: 5403825-5404980 bp Feature: gene Location: 5405314-5405544 bp Feature: gene Location: 5405619-5407028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5405973-5406591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5405973-5406591 bp Feature: domain Description: GIIM Note: maturase Location: 5406642-5406867 bp Feature: domain Description: GIIM Note: maturase Location: 5406642-5406867 bp Feature: gene Location: 5407187-5407444 bp Feature: gene Location: 5407806-5408639 bp Feature: domain Description: PNP-EcPNPII_like Location: 5407836-5408625 bp Feature: domain Description: PNP-EcPNPII_like Location: 5407836-5408625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR04076 (TIGR04076 family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), DUF3102 (pfam11300), ligA (PRK14351), PRK14869 (putative manganese-dependent inorganic diphosphatase), PRK05788 (cobalt-precorrin 5A hydrolase), CobM (COG2875)
Precorrin_2_C20_MT (cd11645), PRK12342 (electron transfer flavoprotein), PRK03525 (L-carnitine CoA-transferase), Intron_maturas2 (pfam01348), MFS_MMR_MDR_like (cd17504), PRK06688 (enoyl-CoA hydratase; Provisional), COG3379 (Predicted phosphohydrolase or phosphomutase, AlkP superfamily ), Tar (COG0840), PBP2_Bug_TTT (cd07012), DUF3852 (pfam12963)
MobL (pfam18555), HNHc (smart00507), TPR (smart00028), dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), SpoU (COG0566), PRK05362 (phosphopentomutase; Provisional), PNP-EcPNPII_like (cd09009)