myRT

myRT report for GCA_007830515.1_ASM783051v1

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Seq: VLKT01000013.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00013.13, whole genome shotgun sequence (146420 bp)
Overview 1 RT 1: 1-1278 bp Neighborhood of RT #1 [1, 1283] RVT-GII GIIM YciA Feature: gene Location: 1-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: domain Description: GIIM Note: maturase Location: 268-496 bp Feature: domain Description: GIIM Note: maturase Location: 268-496 bp Feature: gene Location: 687-833 bp Feature: gene Location: 888-1283 bp Feature: domain Description: YciA Location: 915-1278 bp Feature: domain Description: YciA Location: 91 5-1 278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YciA (COG1607)

Seq: VLKT01000044.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00044.44, whole genome shotgun sequence (65352 bp)
Overview 1 RT 1: 3-2022 bp Neighborhood of RT #1 [3, 2363] RVT-Retrons DUF2235 Feature: gene Location: 3-176 bp Feature: gene Location: 274-771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 433-769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 433-769 bp Feature: gene Location: 568-1014 bp Feature: gene Location: 1197-2363 bp Feature: domain Description: DUF2235 Location: 1236-2022 bp Feature: domain Description: DUF2 2 35 Location: 12 36-2 02 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF2235 (pfam09994)

Seq: VLKT01000057.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00057.57, whole genome shotgun sequence (42574 bp)
Overview 1 RT 1: 11443-18691 bp Neighborhood of RT #1 [11443, 18691] ExoI_N sbcB ALP_N-acyl_transferase group_II_RT_mat RVT-UG6 SRAP Feature: gene Location: 11443-12849 bp Feature: domain Description: ExoI_N Location: 11452-12001 bp Feature: domain Description: ExoI_N Location: 11452-12001 bp Feature: domain Description: sbcB Note: exonuclease Location: 12271-12742 bp Feature: domain Description: sbcB Note: exonuclease Location: 12271-12742 bp Feature: gene Location: 12940-13854 bp Feature: domain Description: ALP_N-acyl_transferase Location: 13060-13540 bp Feature: domain Description: ALP_N-acyl_transferase Location: 13 060-13 540 bp Feature: gene Location: 13844-17095 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13877-14204 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13 877-14204 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 14486-14927 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 14486-14927 bp Feature: gene Location: 17612-18157 bp Feature: domain Description: SRAP Location: 17648-18146 bp Feature: domain Description: SRAP Location: 17648-18146 bp Feature: gene Location: 18305-18691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ExoI_N (cd06138), sbcB (PRK11779), ALP_N-acyl_transferase (cd07571), group_II_RT_mat (TIGR04416), RVT-UG6, SRAP (pfam02586)

Seq: VLKT01000062.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00062.62, whole genome shotgun sequence (36718 bp)
Overview 1 RT 1: 1-1962 bp Neighborhood of RT #1 [1, 2045] RVT-GII GIIM HxlR GstA Feature: gene Location: 1-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -220 bp Feature: domain Description: GIIM Note: maturase Location: 268-496 bp Feature: domain Description: GIIM Note: maturase Location: 268-4 96 bp Feature: gene Location: 868-1233 bp Feature: domain Description: HxlR Location: 889-1183 bp Feature: domain Description: HxlR Location: 889-1183 bp Feature: gene Location: 1341-2045 bp Feature: domain Description: GstA Location: 1359-1962 bp Feature: domain Description: GstA Location: 1359-1962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HxlR (pfam01638), GstA (COG0625)

Seq: VLKT01000113.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00113.113, whole genome shotgun sequence (10142 bp)
Overview 1 RT 1: 3-2757 bp Neighborhood of RT #1 [3, 2765] PRK10517 RVT-GII USP_Like USP_Like Feature: gene Location: 3-437 bp Feature: domain Description: PRK10517 Location: 6-396 bp Feature: domain Description: PRK105 17 Location: 6-396 bp Feature: gene Location: 664-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1225 bp Feature: gene Location: 1406-1687 bp Feature: gene Location: 1896-2765 bp Feature: domain Description: USP_Like Location: 2001-2358 bp Feature: domain Description: USP_Like Location: 2001-235 8 bp Feature: domain Description: USP_Like Location: 2403-2757 bp Feature: domain Description: USP_Like Location: 2403-275 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10517 (magnesium-transporting P-type ATPase MgtA), RVT-GII, USP_Like (cd00293)

Seq: VLKT01000123.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00123.123, whole genome shotgun sequence (5384 bp)
Overview 1 RT 1: 2490-5316 bp Neighborhood of RT #1 [2490, 5381] DDE_Tnp_IS66_C DDE_Tnp_IS66 RVT-GII HTH_17 HTH_17 Feature: gene Location: 2490-2720 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2493-2592 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 2493-2592 bp Feature: gene Location: 2853-3359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2862-3237 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 286 2-3237 bp Feature: gene Location: 4141-4713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4468-4705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446 8-4705 bp Feature: gene Location: 4725-5381 bp Feature: domain Description: HTH_17 Location: 5046-5163 bp Feature: domain Description: HTH_17 Location: 5046 -516 3 bp Feature: domain Description: HTH_17 Location: 5223-5316 bp Feature: domain Description: HTH_17 Location: 5223-5316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), RVT-GII, HTH_17 (pfam12728)

Seq: VLKT01000129.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00129.129, whole genome shotgun sequence (3252 bp)
Overview 1 RT 1: 84-2784 bp Neighborhood of RT #1 [84, 2831] RVT-GII COG3415 COG3547 Feature: gene Location: 84-689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300-687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300-687 bp Feature: gene Location: 1372-1683 bp Feature: domain Description: COG3415 Location: 1375-1669 bp Feature: domain Description: COG3415 Location: 137 5-1669 bp Feature: gene Location: 1560-2831 bp Feature: domain Description: COG3547 Location: 1818-2784 bp Feature: domain Description: COG3547 Location: 1818-27 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3415 (Transposase ), COG3547 (Transposase )

Seq: VLKT01000130.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00130.130, whole genome shotgun sequence (3223 bp)
Overview 1 RT 1: 3-1539 bp Neighborhood of RT #1 [3, 1539] RVT-GII Feature: gene Location: 3-767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-402 bp Feature: gene Location: 838-1020 bp Feature: gene Location: 1411-1539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VLKT01000134.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00134.134, whole genome shotgun sequence (3125 bp)
Overview 1 RT 1: 1423-3037 bp Neighborhood of RT #1 [1423, 3123] DDE_3 RVT-GII GIIM Feature: gene Location: 1423-1611 bp Feature: gene Location: 1814-2314 bp Feature: domain Description: DDE_3 Location: 1850-2213 bp Feature: domain Description: DDE_3 Location: 1850-2213 bp Feature: gene Location: 2368-3123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2455-2734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2455-2734 bp Feature: domain Description: GIIM Note: maturase Location: 2815-3037 bp Feature: domain Description: GIIM Note: maturase Location: 2815-3037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: VLKT01000135.1 Mesorhizobium tianshanense strain CGMCC 1.2546 IQ26DRAFT_scaffold00135.135, whole genome shotgun sequence (3090 bp)
Overview 1 RT 1: 104-2865 bp Neighborhood of RT #1 [104, 2865] RVT-Retrons Trypsin_2 AbiJ_NTD3 Abi_C Feature: gene Location: 104-1186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107-362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10 7-362 bp Feature: domain Description: Trypsin_2 Location: 707-1109 bp Feature: domain Description: Trypsin_2 Location: 707-110 9 bp Feature: gene Location: 1190-2365 bp Feature: domain Description: AbiJ_NTD3 Location: 1493-1979 bp Feature: domain Description: AbiJ_NTD3 Location: 1493-1979 bp Feature: domain Description: Abi_C Location: 2111-2336 bp Feature: domain Description: Abi_C Location: 2111-2336 bp Feature: gene Location: 2635-2865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), AbiJ_NTD3 (pfam18860), Abi_C (pfam14355)