myRT

myRT report for GCA_007830875.1_ASM783087v1

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Seq: VLKB01000007.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.6, whole genome shotgun sequence (2989987 bp)
Overview 1 RT 1: 655633-661419 bp 2 RT 2: 1810779-1814771 bp Neighborhood of RT #1 [655633, 661469] PinE Zn_ribbon_recom HTH_MerR-SF DUF5372 RVT-GII GIIM McrA NirD Pentapeptide Pentapeptide Neighborhood of RT #2 [1810779, 1814771] SWIM RVT-Retrons PIN_VapC-like Feature: gene Location: 655633-657711 bp Feature: domain Description: PinE Location: 655672-656335 bp Feature: domain Description: PinE Location: 655672-656335 bp Feature: domain Description: Zn_ribbon_recom Location: 656629-656806 bp Feature: domain Description: Zn_ribbon_recom Location: 656629-656806 bp Feature: domain Description: HTH_MerR-SF Location: 657529-657607 bp Feature: domain Description: HTH_MerR-SF Location: 657529-657607 bp Feature: gene Location: 657717-658163 bp Feature: domain Description: DUF5372 Location: 657741-657951 bp Feature: domain Description: DUF5372 Location: 657741 -657951 bp Feature: gene Location: 658196-659497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658199-658844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6581 99-658844 bp Feature: domain Description: GIIM Note: maturase Location: 658910-659057 bp Feature: domain Description: GIIM Note: maturase Location: 65891 0-659057 bp Feature: domain Description: McrA Location: 659120-659408 bp Feature: domain Description: McrA Location: 6591 20-659408 bp Feature: gene Location: 659698-660954 bp Feature: domain Description: NirD Location: 659746-660034 bp Feature: domain Description: NirD Location: 659746-660034 bp Feature: gene Location: 661194-661469 bp Feature: domain Description: Pentapeptide Location: 661266-661305 bp Feature: domain Description: Pentapeptide Location: 661 266-661 305 bp Feature: domain Description: Pentapeptide Location: 661335-661419 bp Feature: domain Description: Pentapeptide Location: 661 335-661 41 9 bp Feature: gene Location: 1810779-1812437 bp Feature: domain Description: SWIM Location: 1812300-1812387 bp Feature: domain Description: SWIM Location: 1 81 2300-1 81 2387 bp Feature: gene Location: 1812518-1812715 bp Feature: gene Location: 1812901-1814328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1813462-1814077 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 3462-1 81 4077 bp Feature: gene Location: 1814400-1814579 bp Feature: domain Description: PIN_VapC-like Location: 1814457-1814565 bp Feature: domain Description: PIN_VapC-like Location: 1 81 4457-1 81 4565 bp Feature: gene Location: 1814592-1814771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_MerR-SF (cl02600), DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), McrA (COG4058), NirD (COG2146), Pentapeptide (pfam00805), SWIM (pfam04434)
RVT-Retrons, PIN_VapC-like (cd18715)

Seq: VLKB01000008.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.7, whole genome shotgun sequence (2189268 bp)
Overview 1 RT 1: 99551-103573 bp 2 RT 2: 474050-481031 bp 3 RT 3: 813335-817770 bp Neighborhood of RT #1 [99551, 103578] RVT_N RVT-GII McrA zeta_crystallin Neighborhood of RT #2 [474050, 481414] fdx_plant acnB RVT-AbiA abortive_AbiA COG1479 Neighborhood of RT #3 [813335, 817770] YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 99551-99808 bp Feature: gene Location: 100029-100208 bp Feature: gene Location: 100345-101859 bp Feature: domain Description: RVT_N Location: 100381-100624 bp Feature: domain Description: RVT_N Location: 100381-10062 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100678-101275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100678-1012 75 bp Feature: domain Description: McrA Location: 101509-101848 bp Feature: domain Description: McrA Location: 101509-101848 bp Feature: gene Location: 101848-102087 bp Feature: gene Location: 102613-103578 bp Feature: domain Description: zeta_crystallin Location: 102616-103573 bp Feature: domain Description: zeta_crystallin Location: 102 616-103573 bp Feature: gene Location: 474050-474367 bp Feature: domain Description: fdx_plant Location: 474062-474344 bp Feature: domain Description: fdx_plant Location: 474062 -474344 bp Feature: gene Location: 474597-477239 bp Feature: domain Description: acnB Location: 474600-477180 bp Feature: domain Description: acnB Location: 474600-477180 bp Feature: gene Location: 477484-478656 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 477487-477715 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 477487-477715 bp Feature: gene Location: 478978-479403 bp Feature: domain Description: abortive_AbiA Location: 479011-479398 bp Feature: domain Description: abortive_AbiA Location: 479011-479398 bp Feature: gene Location: 479609-481414 bp Feature: domain Description: COG1479 Location: 479657-481031 bp Feature: domain Description: COG1479 Location: 479657-481031 bp Feature: gene Location: 813335-814921 bp Feature: domain Description: YfmG Location: 814148-814898 bp Feature: domain Description: YfmG Location: 814148-814898 bp Feature: gene Location: 815034-815369 bp Feature: domain Description: Avd_like Location: 815052-815358 bp Feature: domain Description: Avd_like Location: 815052 -815358 bp Feature: gene Location: 815382-816440 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 815592-816234 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 815592 -8162 34 bp Feature: gene Location: 816726-817595 bp Feature: domain Description: YfmG Location: 816792-817572 bp Feature: domain Description: YfmG Location: 816792 -817572 bp Feature: gene Location: 817600-817770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), zeta_crystallin (cd08253), fdx_plant (TIGR02008), acnB (TIGR00117), RVT-AbiA, abortive_AbiA (TIGR04499), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), YfmG (COG1262)
Avd_like (cd16376), RVT-DGRs

Seq: VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence (2372181 bp)
Overview 1 RT 1: 983477-988036 bp 2 RT 2: 1743290-1753143 bp Neighborhood of RT #1 [983477, 988092] TMEM43 RVT-Retrons Tudor-knot Tudor-knot PG_binding_1 PG_binding_1 Neighborhood of RT #2 [1743290, 1753143] Cas2_I_II_III Cas_Cas1 RVT-CRISPR cas1 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 CHAT Feature: gene Location: 983477-983650 bp Feature: gene Location: 983647-984315 bp Feature: domain Description: TMEM43 Location: 983746-984238 bp Feature: domain Description: TMEM43 Location: 983 746-98423 8 bp Feature: gene Location: 984360-985904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 985050-985671 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 985050-985671 bp Feature: gene Location: 986166-987470 bp Feature: domain Description: Tudor-knot Location: 987156-987282 bp Feature: domain Description: Tudor-knot Location: 987156-987282 bp Feature: domain Description: Tudor-knot Location: 987339-987465 bp Feature: domain Description: Tudor-knot Location: 9873 3 9-987465 bp Feature: gene Location: 987583-988092 bp Feature: domain Description: PG_binding_1 Location: 987640-987817 bp Feature: domain Description: PG_binding_1 Location: 987640-987817 bp Feature: domain Description: PG_binding_1 Location: 987871-988036 bp Feature: domain Description: PG_binding_1 Location: 987871-98803 6 bp Feature: gene Location: 1743290-1743568 bp Feature: domain Description: Cas2_I_II_III Location: 1743299-1743530 bp Feature: domain Description: Cas2_I_II_III Location: 1743 299-1743 53 0 bp Feature: gene Location: 1743571-1744608 bp Feature: domain Description: Cas_Cas1 Location: 1743583-1744321 bp Feature: domain Description: Cas_Cas1 Location: 1743 583 -17443 21 bp Feature: gene Location: 1746525-1748528 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1746711-1747317 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1746711-17473 17 bp Feature: domain Description: cas1 Location: 1747533-1748496 bp Feature: domain Description: cas1 Location: 174753 3 -1748496 bp Feature: gene Location: 1748657-1752055 bp Feature: domain Description: TPR_10 Location: 1748870-1748981 bp Feature: domain Description: TPR_10 Location: 1748870-1748981 bp Feature: domain Description: TPR_10 Location: 1748990-1749110 bp Feature: domain Description: TPR_10 Location: 1748990-1749110 bp Feature: domain Description: TPR_10 Location: 1749119-1749239 bp Feature: domain Description: TPR_10 Location: 1749119-174923 9 bp Feature: domain Description: TPR_10 Location: 1749248-1749365 bp Feature: domain Description: TPR_10 Location: 1749248-17493 65 bp Feature: domain Description: TPR_10 Location: 1749368-1749491 bp Feature: domain Description: TPR_10 Location: 17493 68-1749491 bp Feature: domain Description: TPR_10 Location: 1749527-1749617 bp Feature: domain Description: TPR_10 Location: 1749527-1749617 bp Feature: domain Description: TPR_10 Location: 1749623-1749740 bp Feature: domain Description: TPR_10 Location: 1749623 -1749740 bp Feature: domain Description: TPR_10 Location: 1749743-1749863 bp Feature: domain Description: TPR_10 Location: 1749743 -1749863 bp Feature: domain Description: TPR_10 Location: 1749872-1749992 bp Feature: domain Description: TPR_10 Location: 1749872-1749992 bp Feature: domain Description: TPR_10 Location: 1749995-1750118 bp Feature: domain Description: TPR_10 Location: 1749995-1750118 bp Feature: domain Description: TPR_10 Location: 1750121-1750190 bp Feature: domain Description: TPR_10 Location: 1750121-1750190 bp Feature: domain Description: CHAT Location: 1750967-1752053 bp Feature: domain Description: CHAT Location: 1750967-1752053 bp Feature: gene Location: 1752268-1753143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMEM43 (pfam07787), RVT-Retrons, Tudor-knot (pfam11717), PG_binding_1 (pfam01471), Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, cas1 (TIGR00287), TPR_10 (pfam13374), CHAT (pfam12770)

Seq: VLKB01000010.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.9, whole genome shotgun sequence (2629450 bp)
Overview 1 RT 1: 108256-111747 bp Neighborhood of RT #1 [108256, 111917] RVT_N RVT-GII GIIM HNHc PIN_8 Feature: gene Location: 108256-108393 bp Feature: gene Location: 108579-108743 bp Feature: gene Location: 109486-111006 bp Feature: domain Description: RVT_N Location: 109489-109618 bp Feature: domain Description: RVT_N Location: 1094 89-109618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109669-110308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109669-110308 bp Feature: domain Description: GIIM Note: maturase Location: 110383-110614 bp Feature: domain Description: GIIM Note: maturase Location: 110383-110614 bp Feature: domain Description: HNHc Note: nucleases Location: 110818-110983 bp Feature: domain Description: HNHc Note: nucleases Location: 110818-110983 bp Feature: gene Location: 111080-111325 bp Feature: gene Location: 111399-111917 bp Feature: domain Description: PIN_8 Location: 111408-111747 bp Feature: domain Description: PIN_8 Location: 1114 08-11174 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PIN_8 (pfam18476)