myRT

myRT report for GCA_007858155.1_ASM785815v1

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Seq: VFEQ01000014.1 Pseudomonas marginalis strain DSM 13124 14_134578_6.69166, whole genome shotgun sequence (134578 bp)
Overview 1 RT 1: 100744-103783 bp Neighborhood of RT #1 [100744, 103783] RVT-GII RVT-GII COG3618 Feature: gene Location: 100744-100911 bp Feature: gene Location: 101175-101336 bp Feature: gene Location: 101490-101684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101505-101646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 505-1 01 646 bp Feature: gene Location: 101808-101948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101820-101916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 820-1 01 91 6 bp Feature: gene Location: 101978-102991 bp Feature: domain Description: COG3618 Location: 102032-102983 bp Feature: domain Description: COG361 8 Location: 1 02032-1 02983 bp Feature: gene Location: 103028-103783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3618 (Predicted metal-dependent hydrolase, TIM-barrel fold )

Seq: VFEQ01000001.1 Pseudomonas marginalis strain DSM 13124 1_651052_8.31437, whole genome shotgun sequence (651052 bp)
Overview 1 RT 1: 441109-448046 bp 2 RT 2: 643119-650645 bp Neighborhood of RT #1 [441109, 448046] PRK10770 LptD RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [643119, 650645] DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 RVT-GII Feature: gene Location: 441109-442449 bp Feature: domain Description: PRK10770 Location: 441193-442399 bp Feature: domain Description: PRK10770 Location: 441193-442 399 bp Feature: gene Location: 442424-445198 bp Feature: domain Description: LptD Location: 442646-445181 bp Feature: domain Description: LptD Location: 442 646-445181 bp Feature: gene Location: 445389-447089 bp Feature: domain Description: RVT_N Location: 445446-445689 bp Feature: domain Description: RVT_N Location: 445446-445689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445734-446370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445734-446370 bp Feature: domain Description: GIIM Note: maturase Location: 446421-446655 bp Feature: domain Description: GIIM Note: maturase Location: 44642 1-446655 bp Feature: domain Description: HNH Note: nucleases Location: 446907-447045 bp Feature: domain Description: HNH Note: nucleases Location: 446907-447045 bp Feature: gene Location: 447414-447578 bp Feature: gene Location: 447918-448046 bp Feature: gene Location: 643119-643601 bp Feature: gene Location: 643782-643994 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 643854-643968 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 643854-643968 bp Feature: gene Location: 644518-645924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644836-645499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644836-645499 bp Feature: domain Description: GIIM Note: maturase Location: 645568-645778 bp Feature: domain Description: GIIM Note: maturase Location: 645568-645778 bp Feature: gene Location: 646434-647240 bp Feature: domain Description: LZ_Tnp_IS66 Location: 646521-646731 bp Feature: domain Description: LZ_Tnp_IS66 Location: 64652 1-646731 bp Feature: domain Description: zf-IS66 Location: 646761-646884 bp Feature: domain Description: zf-IS66 Location: 646761-646884 bp Feature: domain Description: DDE_Tnp_IS66 Location: 646929-647181 bp Feature: domain Description: DDE_Tnp_IS66 Location: 64692 9-647181 bp Feature: gene Location: 647259-647618 bp Feature: domain Description: TnpB_IS66 Location: 647289-647580 bp Feature: domain Description: TnpB_IS66 Location: 6472 89-647580 bp Feature: gene Location: 647965-649293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648469-649159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648469-649159 bp Feature: gene Location: 650421-650645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
TnpB_IS66 (pfam05717)

Seq: VFEQ01000025.1 Pseudomonas marginalis strain DSM 13124 25_97481_7.11519, whole genome shotgun sequence (97481 bp)
Overview 1 RT 1: 55996-60330 bp Neighborhood of RT #1 [55996, 60330] RVT-Retrons HTH_MARR Feature: gene Location: 55996-56265 bp Feature: gene Location: 56364-56498 bp Feature: gene Location: 57239-58405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57500-58142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57500-58142 bp Feature: gene Location: 58595-59896 bp Feature: domain Description: HTH_MARR Location: 59618-59780 bp Feature: domain Description: HTH_MARR Location: 59618-59780 bp Feature: gene Location: 60157-60330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_MARR (smart00347)

Seq: VFEQ01000028.1 Pseudomonas marginalis strain DSM 13124 28_94868_7.42104, whole genome shotgun sequence (94868 bp)
Overview 1 RT 1: 35521-38561 bp 2 RT 2: 74830-76969 bp Neighborhood of RT #1 [35521, 38617] RVT-GII RVT-GII MhpC MhpC DUF4189 Neighborhood of RT #2 [74830, 76969] RVT-GII Feature: gene Location: 35521-35706 bp Feature: gene Location: 35717-35926 bp Feature: gene Location: 35952-36461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35958-36450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35958-364 50 bp Feature: gene Location: 36458-36856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36662-36845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36662-3684 5 bp Feature: gene Location: 37067-37363 bp Feature: gene Location: 37499-38617 bp Feature: domain Description: MhpC Location: 37703-38030 bp Feature: domain Description: MhpC Location: 37703-38030 bp Feature: domain Description: MhpC Location: 38126-38243 bp Feature: domain Description: MhpC Location: 38126-3824 3 bp Feature: domain Description: DUF4189 Location: 38420-38561 bp Feature: domain Description: DUF4 189 Location: 384 20-38561 bp Feature: gene Location: 74830-75159 bp Feature: gene Location: 75359-75508 bp Feature: gene Location: 75628-75852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75631-75850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75631-75850 bp Feature: gene Location: 76148-76561 bp Feature: gene Location: 76754-76969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MhpC (COG0596), DUF4189 (pfam13827)

Seq: VFEQ01000002.1 Pseudomonas marginalis strain DSM 13124 2_457710_8.24919, whole genome shotgun sequence (457710 bp)
Overview 1 RT 1: 405406-410548 bp Neighborhood of RT #1 [405406, 410548] DUF808 RVT-Retrons Feature: gene Location: 405406-406323 bp Feature: domain Description: DUF808 Location: 405418-406282 bp Feature: domain Description: DUF808 Location: 405 418-406282 bp Feature: gene Location: 406498-407316 bp Feature: gene Location: 407592-408707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 407730-408297 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 407730-408297 bp Feature: gene Location: 408780-409034 bp Feature: gene Location: 409727-410548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF808 (pfam05661), RVT-Retrons

Seq: VFEQ01000041.1 Pseudomonas marginalis strain DSM 13124 41_41050_7.96603, whole genome shotgun sequence (41050 bp)
Overview 1 RT 1: 9003-13020 bp Neighborhood of RT #1 [9003, 13020] PRK10276 SF2_C_SNF RVT_N RVT-GII GIIM HNHc Feature: gene Location: 9003-9437 bp Feature: domain Description: PRK10276 Location: 9051-9417 bp Feature: domain Description: PRK10276 Location: 9051-9417 bp Feature: gene Location: 9577-10737 bp Feature: domain Description: SF2_C_SNF Location: 10195-10573 bp Feature: domain Description: SF2_C_SNF Location: 10195-10573 bp Feature: gene Location: 10904-12622 bp Feature: domain Description: RVT_N Location: 10961-11198 bp Feature: domain Description: RVT_N Location: 1096 1-11198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11249-11900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11249-11900 bp Feature: domain Description: GIIM Note: maturase Location: 11954-12185 bp Feature: domain Description: GIIM Note: maturase Location: 11954-12185 bp Feature: domain Description: HNHc Note: nucleases Location: 12419-12575 bp Feature: domain Description: HNHc Note: nucleases Location: 12419-12575 bp Feature: gene Location: 12677-12853 bp Feature: gene Location: 12892-13020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)