myRT

myRT report for GCA_007858235.1_ASM785823v1

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Seq: VFET01000011.1 Pseudomonas extremaustralis strain DSM 17835 11_187815_7.94137, whole genome shotgun sequence (187815 bp)
Overview 1 RT 1: 137712-144682 bp Neighborhood of RT #1 [137712, 144682] EmrA RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII COG4584 COG4584 Feature: gene Location: 137712-138764 bp Feature: domain Description: EmrA Location: 137727-138705 bp Feature: domain Description: EmrA Location: 1 37727-1 38705 bp Feature: gene Location: 138936-139211 bp Feature: gene Location: 139675-140364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139948-140341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39948-1 40341 bp Feature: gene Location: 140659-141378 bp Feature: domain Description: Resolvase Location: 140680-141118 bp Feature: domain Description: Resolvase Location: 1 40680-1 41 1 1 8 bp Feature: domain Description: Recombinase Location: 141214-141376 bp Feature: domain Description: Recombinase Location: 1 41 21 4-1 41 376 bp Feature: gene Location: 141451-142371 bp Feature: domain Description: Zn_ribbon_recom Location: 141610-141814 bp Feature: domain Description: Zn_ribbon_recom Location: 1 41 61 0-1 41 81 4 bp Feature: gene Location: 142379-142705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142388-142598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42388-1 42598 bp Feature: gene Location: 142771-144300 bp Feature: domain Description: COG4584 Location: 142885-143677 bp Feature: domain Description: COG4584 Location: 1 42885-1 43677 bp Feature: domain Description: COG4584 Location: 143734-144187 bp Feature: domain Description: COG4584 Location: 1 43734-1 441 87 bp Feature: gene Location: 144347-144682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrA (COG1566), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), COG4584 (Transposase )

Seq: VFET01000017.1 Pseudomonas extremaustralis strain DSM 17835 17_135920_7.08857, whole genome shotgun sequence (135920 bp)
Overview 1 RT 1: 64807-70711 bp Neighborhood of RT #1 [64807, 70711] MFS_ProP GlxA RVT-GII Feature: gene Location: 64807-66093 bp Feature: domain Description: MFS_ProP Location: 64846-66073 bp Feature: domain Description: MFS_ProP Location: 64846-66073 bp Feature: gene Location: 66180-67199 bp Feature: domain Description: GlxA Location: 66246-67185 bp Feature: domain Description: GlxA Location: 662 46-67185 bp Feature: gene Location: 67926-69692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68610-69300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68610-69300 bp Feature: gene Location: 69803-69970 bp Feature: gene Location: 70562-70711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ProP (cd17366), GlxA (COG4977), RVT-GII

Seq: VFET01000020.1 Pseudomonas extremaustralis strain DSM 17835 20_113264_8.00268, whole genome shotgun sequence (113264 bp)
Overview 1 RT 1: 64980-69401 bp Neighborhood of RT #1 [64980, 69427] PRK10510 TTHA1623-like_MBL-fold RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 64980-65753 bp Feature: domain Description: PRK10510 Location: 64998-65661 bp Feature: domain Description: PRK10510 Location: 64998-65661 bp Feature: gene Location: 65969-66184 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 65978-66176 bp Feature: domain Description: TTHA1623 -like_MBL-fold Location: 65978-66176 bp Feature: gene Location: 66354-67946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66858-67548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66858-67548 bp Feature: gene Location: 68255-68515 bp Feature: gene Location: 68585-69427 bp Feature: domain Description: DDE_Tnp_IS66 Location: 68588-69266 bp Feature: domain Description: DDE_Tnp_IS66 Location: 68588-69266 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 69287-69401 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 69287-69401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10510 (OmpA family lipoprotein), TTHA1623-like_MBL-fold (cd16322), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: VFET01000008.1 Pseudomonas extremaustralis strain DSM 17835 8_259659_7.97176, whole genome shotgun sequence (259659 bp)
Overview 1 RT 1: 2-3229 bp Neighborhood of RT #1 [2, 3229] DUF772 RVT-GII GIIM Feature: gene Location: 2-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 2468-2866 bp Feature: gene Location: 3050-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)