myRT

myRT report for GCA_007858255.1_ASM785825v1

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Seq: VFEU01000022.1 Pseudomonas rhodesiae strain DSM 14020 22_85184_44.6197, whole genome shotgun sequence (85184 bp)
Overview 1 RT 1: 76516-81358 bp Neighborhood of RT #1 [76516, 81441] PHA02517 InsE RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 76516-77325 bp Feature: domain Description: PHA02517 Location: 76522-77299 bp Feature: domain Description: PHA0251 7 Location: 76522-77299 bp Feature: gene Location: 77370-77678 bp Feature: domain Description: InsE Location: 77373-77664 bp Feature: domain Description: InsE Location: 77373-77664 bp Feature: gene Location: 77852-79120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78065-78722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78065-78722 bp Feature: domain Description: GIIM Note: maturase Location: 78800-79022 bp Feature: domain Description: GIIM Note: maturase Location: 78800-79022 bp Feature: gene Location: 79613-80152 bp Feature: domain Description: IS5 Location: 79802-80129 bp Feature: domain Description: IS5 Location: 79802-801 29 bp Feature: gene Location: 80614-81441 bp Feature: domain Description: ABC_phnC Location: 80644-81358 bp Feature: domain Description: ABC_phnC Location: 80644-81 358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388), IS5 (COG3039), ABC_phnC (TIGR02315)

Seq: VFEU01000025.1 Pseudomonas rhodesiae strain DSM 14020 25_74455_71.6488, whole genome shotgun sequence (74455 bp)
Overview 1 RT 1: 46245-49180 bp Neighborhood of RT #1 [46245, 49180] RVT-GII GIIM Feature: gene Location: 46245-46400 bp Feature: gene Location: 46470-46604 bp Feature: gene Location: 47036-48457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47393-48008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47393-48008 bp Feature: domain Description: GIIM Note: maturase Location: 48065-48290 bp Feature: domain Description: GIIM Note: maturase Location: 48065-482 90 bp Feature: gene Location: 48592-48777 bp Feature: gene Location: 48923-49180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VFEU01000032.1 Pseudomonas rhodesiae strain DSM 14020 32_56082_47.6425, whole genome shotgun sequence (56082 bp)
Overview 1 RT 1: 112-10909 bp Neighborhood of RT #1 [112, 11802] dnaG RVT-UNC SMC_prok_A PRK07078 DUF927 Feature: gene Location: 112-261 bp Feature: gene Location: 371-7900 bp Feature: domain Description: dnaG Location: 383-1445 bp Feature: domain Description: dnaG Location: 3 83 -1445 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2732-2969 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 273 2-2969 bp Feature: gene Location: 7966-8823 bp Feature: domain Description: SMC_prok_A Location: 7975-8572 bp Feature: domain Description: SMC_prok_A Location: 7975-8572 bp Feature: gene Location: 8914-11802 bp Feature: domain Description: PRK07078 Location: 8959-9973 bp Feature: domain Description: PRK07078 Location: 8959-9973 bp Feature: domain Description: DUF927 Location: 10072-10909 bp Feature: domain Description: DUF927 Location: 10072-10909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG19/RVT-UG10/RVT-UG4/RVT-UG3(RVT-UNC), SMC_prok_A (TIGR02169), PRK07078 (hypothetical protein; Validated), DUF927 (pfam06048)

Seq: VFEU01000035.1 Pseudomonas rhodesiae strain DSM 14020 35_44598_63.7705, whole genome shotgun sequence (44598 bp)
Overview 1 RT 1: 3258-7378 bp Neighborhood of RT #1 [3258, 7386] Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM MvaT_DBD Feature: gene Location: 3258-4514 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3270-3513 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3270-3513 bp Feature: domain Description: INT_P4_C Location: 3900-4416 bp Feature: domain Description: INT_P4 _C Location: 3900-4 4 16 bp Feature: gene Location: 4564-5049 bp Feature: gene Location: 5224-6516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5485-6100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 85-6100 bp Feature: domain Description: GIIM Note: maturase Location: 6154-6358 bp Feature: domain Description: GIIM Note: maturase Location: 6154 -6358 bp Feature: gene Location: 6595-6768 bp Feature: gene Location: 7027-7386 bp Feature: domain Description: MvaT_DBD Location: 7258-7378 bp Feature: domain Description: MvaT_DBD Location: 7258-7378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-GII, GIIM (pfam08388), MvaT_DBD (cl40688)

Seq: VFEU01000040.1 Pseudomonas rhodesiae strain DSM 14020 40_28622_33.9154, whole genome shotgun sequence (28622 bp)
Overview 1 RT 1: 3895-9479 bp Neighborhood of RT #1 [3895, 9532] TnpB_IS66 RVT-GII LTA_synthase COG3907 Feature: gene Location: 3895-4239 bp Feature: domain Description: TnpB_IS66 Location: 3922-4210 bp Feature: domain Description: TnpB_IS66 Location: 3922-4210 bp Feature: gene Location: 4263-4730 bp Feature: gene Location: 4781-6547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5465-6155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 465 -615 5 bp Feature: gene Location: 6730-8727 bp Feature: domain Description: LTA_synthase Location: 7609-8416 bp Feature: domain Description: LTA_synthase Location: 7609-8416 bp Feature: gene Location: 8783-9532 bp Feature: domain Description: COG3907 Location: 8807-9479 bp Feature: domain Description: COG3907 Location: 8807-9479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, LTA_synthase (cd16015), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily )

Seq: VFEU01000005.1 Pseudomonas rhodesiae strain DSM 14020 5_406291_42.0848, whole genome shotgun sequence (406291 bp)
Overview 1 RT 1: 191265-198970 bp Neighborhood of RT #1 [191265, 198975] OmpR LTA_synthase RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 191265-191948 bp Feature: domain Description: OmpR Location: 191268-191931 bp Feature: domain Description: OmpR Location: 19126 8-191931 bp Feature: gene Location: 192150-194099 bp Feature: domain Description: LTA_synthase Location: 192978-193788 bp Feature: domain Description: LTA_synthase Location: 192978-193788 bp Feature: gene Location: 194257-195948 bp Feature: domain Description: RVT_N Location: 194311-194551 bp Feature: domain Description: RVT_N Location: 194311-194551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194599-195244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194599-195244 bp Feature: domain Description: GIIM Note: maturase Location: 195295-195529 bp Feature: domain Description: GIIM Note: maturase Location: 195295-195529 bp Feature: domain Description: HNHc Note: nucleases Location: 195748-195901 bp Feature: domain Description: HNHc Note: nucleases Location: 195748-195901 bp Feature: gene Location: 196983-198629 bp Feature: domain Description: groEL Location: 196989-198612 bp Feature: domain Description: groEL Location: 196 989-1986 12 bp Feature: gene Location: 198679-198975 bp Feature: domain Description: groES Location: 198688-198970 bp Feature: domain Description: groES Location: 1986 88-198970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), LTA_synthase (cd16015), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)