myRT

myRT report for GCA_007858265.1_ASM785826v1

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Seq: VFIM01000020.1 Pseudomonas mandelii strain DSM 17967 20_139621_28.308, whole genome shotgun sequence (139621 bp)
Overview 1 RT 1: 130617-135275 bp Neighborhood of RT #1 [130617, 135949] RVT-G2L4 COG4584 Feature: gene Location: 130617-130835 bp Feature: gene Location: 131449-131643 bp Feature: gene Location: 131678-132958 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 131924-132509 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1 31 924-1 32509 bp Feature: gene Location: 134086-134346 bp Feature: gene Location: 134441-135949 bp Feature: domain Description: COG4584 Location: 134489-135275 bp Feature: domain Description: COG4584 Location: 1 34489-1 35275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, COG4584 (Transposase )

Seq: VFIM01000003.1 Pseudomonas mandelii strain DSM 17967 3_412998_32.835, whole genome shotgun sequence (412998 bp)
Overview 1 RT 1: 325000-332671 bp Neighborhood of RT #1 [325000, 332673] RhtB PRK06156 RVT_N RVT-GII Resolvase RVT-GII GIIM HNHc PRK12488 Feature: gene Location: 325000-325638 bp Feature: domain Description: RhtB Location: 325021-325633 bp Feature: domain Description: RhtB Location: 32 502 1-32 5633 bp Feature: gene Location: 325837-327576 bp Feature: domain Description: PRK06156 Location: 325843-327574 bp Feature: domain Description: PRK06156 Location: 32 5843-32 7574 bp Feature: gene Location: 327956-328693 bp Feature: domain Description: RVT_N Location: 328001-328244 bp Feature: domain Description: RVT_N Location: 32 8001-32 82 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328289-328670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 82 89-32 8670 bp Feature: gene Location: 328809-328991 bp Feature: gene Location: 329094-330191 bp Feature: domain Description: Resolvase Location: 329136-329442 bp Feature: domain Description: Resolvase Location: 32 9136-32 9442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329457-329523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 9457-32 952 3 bp Feature: domain Description: GIIM Note: maturase Location: 329598-329829 bp Feature: domain Description: GIIM Note: maturase Location: 32 9598-32 982 9 bp Feature: domain Description: HNHc Note: nucleases Location: 330051-330183 bp Feature: domain Description: HNHc Note: nucleases Location: 330051-330183 bp Feature: gene Location: 330366-330935 bp Feature: gene Location: 331009-332673 bp Feature: domain Description: PRK12488 Location: 331039-332671 bp Feature: domain Description: PRK12 488 Location: 331039-332 671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhtB (COG1280), PRK06156 (dipeptidase), RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), GIIM (pfam08388), HNHc (smart00507), PRK12488 (cation/acetate symporter)

Seq: VFIM01000043.1 Pseudomonas mandelii strain DSM 17967 43_25525_27.8779, whole genome shotgun sequence (25525 bp)
Overview 1 RT 1: 113-2970 bp Neighborhood of RT #1 [113, 2975] RVT-GII OprD Feature: gene Location: 113-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-920 bp Feature: gene Location: 1090-1260 bp Feature: gene Location: 1650-2975 bp Feature: domain Description: OprD Location: 1743-2970 bp Feature: domain Description: OprD Location: 1743 -2970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, OprD (pfam03573)

Seq: VFIM01000046.1 Pseudomonas mandelii strain DSM 17967 46_17545_29.2603, whole genome shotgun sequence (17545 bp)
Overview 1 RT 1: 114-1578 bp Neighborhood of RT #1 [114, 1578] RVT-GII GIIM DUF2790 Feature: gene Location: 114-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123-294 bp Feature: domain Description: GIIM Note: maturase Location: 348-576 bp Feature: domain Description: GIIM Note: maturase Location: 34 8-576 bp Feature: gene Location: 907-1239 bp Feature: domain Description: DUF2790 Location: 949-1225 bp Feature: domain Description: DUF2790 Location: 94 9-1225 bp Feature: gene Location: 1381-1578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF2790 (pfam10976)

Seq: VFIM01000006.1 Pseudomonas mandelii strain DSM 17967 6_298023_34.6142, whole genome shotgun sequence (298023 bp)
Overview 1 RT 1: 288961-294192 bp Neighborhood of RT #1 [288961, 294275] PRK10431 PRK10319 IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 288961-290025 bp Feature: domain Description: PRK10431 Location: 289027-289393 bp Feature: domain Description: PRK10431 Location: 289027-289393 bp Feature: domain Description: PRK10319 Location: 289423-290011 bp Feature: domain Description: PRK10319 Location: 289423-290011 bp Feature: gene Location: 290156-290614 bp Feature: domain Description: IS5 Location: 290159-290588 bp Feature: domain Description: IS5 Location: 29015 9-2905 88 bp Feature: gene Location: 290686-291954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290899-291556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290899-2915 5 6 bp Feature: domain Description: GIIM Note: maturase Location: 291634-291856 bp Feature: domain Description: GIIM Note: maturase Location: 291634-29185 6 bp Feature: gene Location: 292447-292986 bp Feature: domain Description: IS5 Location: 292636-292963 bp Feature: domain Description: IS5 Location: 292636-292963 bp Feature: gene Location: 293448-294275 bp Feature: domain Description: ABC_phnC Location: 293478-294192 bp Feature: domain Description: ABC_phnC Location: 293478-294192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)