myRT

myRT report for GCA_007859915.1_ASM785991v1

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Seq: SJPM01000010.1 Planctomycetes bacterium Pla100 Pla100_contig00010, whole genome shotgun sequence (318643 bp)
Overview 1 RT 1: 21848-28053 bp Neighborhood of RT #1 [21848, 28082] RVT-Retrons PLN03124 PARP Macro_Appr_pase_like Feature: gene Location: 21848-22375 bp Feature: gene Location: 22195-23865 bp Feature: gene Location: 23873-25804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24959-25577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24959-25577 bp Feature: gene Location: 25960-27549 bp Feature: domain Description: PLN03124 Location: 26101-26278 bp Feature: domain Description: PLN031 24 Location: 261 01 -26278 bp Feature: domain Description: PARP Location: 26962-27544 bp Feature: domain Description: PARP Location: 26962-27544 bp Feature: gene Location: 27546-28082 bp Feature: domain Description: Macro_Appr_pase_like Location: 27552-28053 bp Feature: domain Description: Macro_Appr_pase_like Location: 27552-28053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PLN03124 (poly polymerase; Provisional), PARP (pfam00644), Macro_Appr_pase_like

Seq: SJPM01000014.1 Planctomycetes bacterium Pla100 Pla100_contig00014, whole genome shotgun sequence (152891 bp)
Overview 1 RT 1: 41566-58925 bp Neighborhood of RT #1 [41566, 60685] UvrD UvrD YprA YprA DUF1998 RVT-UG8 RVT-UG3 YeeA met_A_Alw26 met_A_Alw26 Feature: gene Location: 41566-43680 bp Feature: domain Description: UvrD Location: 42313-43411 bp Feature: domain Description: UvrD Location: 42 313-43411 bp Feature: domain Description: UvrD Location: 43426-43630 bp Feature: domain Description: UvrD Location: 4342 6-43630 bp Feature: gene Location: 43677-49511 bp Feature: domain Description: YprA Location: 43842-44679 bp Feature: domain Description: YprA Location: 43842 -44679 bp Feature: domain Description: YprA Location: 46698-47046 bp Feature: domain Description: YprA Location: 46698-47046 bp Feature: domain Description: DUF1998 Location: 48318-48546 bp Feature: domain Description: DUF1998 Location: 48318-48546 bp Feature: gene Location: 49857-51746 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 50346-50796 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 50346-50796 bp Feature: gene Location: 51739-52935 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52021-52483 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52 02 1-52 483 bp Feature: gene Location: 53138-55417 bp Feature: gene Location: 55454-60685 bp Feature: domain Description: YeeA Location: 57398-57800 bp Feature: domain Description: YeeA Location: 57398-57800 bp Feature: domain Description: met_A_Alw26 Location: 58304-58424 bp Feature: domain Description: met_A_Alw2 6 Location: 58304-5842 4 bp Feature: domain Description: met_A_Alw26 Location: 58685-58925 bp Feature: domain Description: met_A_Alw2 6 Location: 58685-5892 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), YprA (COG1205), DUF1998 (pfam09369), RVT-UG8, RVT-UG3, YeeA (COG1002), met_A_Alw26 (TIGR02987)

Seq: SJPM01000015.1 Planctomycetes bacterium Pla100 Pla100_contig00015, whole genome shotgun sequence (150761 bp)
Overview 1 RT 1: 58992-64628 bp Neighborhood of RT #1 [58992, 64628] MviM PQQ_3 PQQ_2 PQQ_3 RVT-UNC GIIM group_II_RT_mat Feature: gene Location: 58992-60143 bp Feature: domain Description: MviM Location: 58998-60135 bp Feature: domain Description: MviM Location: 58998-6013 5 bp Feature: gene Location: 60799-62343 bp Feature: domain Description: PQQ_3 Location: 61042-61120 bp Feature: domain Description: PQQ_3 Location: 61042-61120 bp Feature: domain Description: PQQ_2 Location: 61363-62101 bp Feature: domain Description: PQQ_2 Location: 613 63 -62101 bp Feature: domain Description: PQQ_3 Location: 62119-62215 bp Feature: domain Description: PQQ_3 Location: 62119-62215 bp Feature: gene Location: 62802-63719 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62808-63366 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62808-63 3 66 bp Feature: domain Description: GIIM Note: maturase Location: 63408-63636 bp Feature: domain Description: GIIM Note: maturase Location: 63 408-63 63 6 bp Feature: gene Location: 63676-64185 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 63910-64120 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 63 910-64120 bp Feature: gene Location: 64233-64628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), PQQ_3 (pfam13570), PQQ_2 (pfam13360), RVT-UNC/RVT-GII/RVT-CRISPR(RVT-UNC), GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: SJPM01000054.1 Planctomycetes bacterium Pla100 Pla100_contig00054, whole genome shotgun sequence (5804 bp)
Overview 1 RT 1: 3069-5799 bp Neighborhood of RT #1 [3069, 5801] RVT-GII Feature: gene Location: 3069-4532 bp Feature: gene Location: 4547-4777 bp Feature: gene Location: 4761-5801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5679-5799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5679-5799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SJPM01000066.1 Planctomycetes bacterium Pla100 Pla100_contig00066, whole genome shotgun sequence (2109 bp)
Overview 1 RT 1: 2-2106 bp Neighborhood of RT #1 [2, 2106] RVT-GII GIIM Feature: gene Location: 2-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -5 60 bp Feature: domain Description: GIIM Note: maturase Location: 611-815 bp Feature: domain Description: GIIM Note: maturase Location: 611-815 bp Feature: gene Location: 1082-1627 bp Feature: gene Location: 1741-2106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)