myRT

myRT report for GCA_007860105.1_ASM786010v1

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Seq: SJPU01000001.1 Planctomycetes bacterium Poly21 Poly21_contig00001, whole genome shotgun sequence (2749606 bp)
Overview 1 RT 1: 15194-21997 bp 2 RT 2: 897196-901445 bp 3 RT 3: 1740784-1747095 bp 4 RT 4: 1787810-1792600 bp 5 RT 5: 2743816-2747097 bp Neighborhood of RT #1 [15194, 22734] HTH_XRE RVT-Retrons ACAD Patatin_and_cPLA2 Neighborhood of RT #2 [897196, 901445] RVT-CRISPR-like Neighborhood of RT #3 [1740784, 1747628] RVT-GII AmpC YdhG RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #4 [1787810, 1792600] RVT-Retrons ABC_MJ0796_LolCDE_FtsE Neighborhood of RT #5 [2743816, 2747097] RVT-GII TatC Feature: gene Location: 15194-15430 bp Feature: gene Location: 15521-15739 bp Feature: domain Description: HTH_XRE Location: 15527-15635 bp Feature: domain Description: HTH_XRE Location: 1 5527-1 5635 bp Feature: gene Location: 15752-16768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15911-16445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 591 1 -1 6445 bp Feature: gene Location: 16830-18839 bp Feature: domain Description: ACAD Location: 17703-18714 bp Feature: domain Description: ACAD Location: 1 7703-1 871 4 bp Feature: gene Location: 18832-22734 bp Feature: domain Description: Patatin_and_cPLA2 Location: 21850-21997 bp Feature: domain Description: Patatin_and_cPLA2 Location: 21 850-21 997 bp Feature: gene Location: 897196-897426 bp Feature: gene Location: 897600-897809 bp Feature: gene Location: 898438-899868 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 898933-899479 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 898933-899479 bp Feature: gene Location: 899883-900533 bp Feature: gene Location: 900636-901445 bp Feature: gene Location: 1740784-1741113 bp Feature: gene Location: 1741120-1741305 bp Feature: gene Location: 1741456-1742046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741477-1741678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 477-1 741 678 bp Feature: gene Location: 1742120-1742362 bp Feature: gene Location: 1742507-1743673 bp Feature: domain Description: AmpC Location: 1742609-1743611 bp Feature: domain Description: AmpC Location: 1 742609-1 74361 1 bp Feature: gene Location: 1743811-1744167 bp Feature: domain Description: YdhG Location: 1743814-1744141 bp Feature: domain Description: YdhG Location: 1 74381 4-1 7441 41 bp Feature: gene Location: 1744311-1744673 bp Feature: gene Location: 1744818-1745720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745022-1745334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 745022-1 745334 bp Feature: domain Description: GIIM Note: maturase Location: 1745406-1745616 bp Feature: domain Description: GIIM Note: maturase Location: 1 745406-1 74561 6 bp Feature: gene Location: 1745656-1745934 bp Feature: gene Location: 1745931-1747628 bp Feature: domain Description: Resolvase Location: 1745964-1746402 bp Feature: domain Description: Resolvase Location: 1 745964-1 746402 bp Feature: domain Description: Recombinase Location: 1746492-1746855 bp Feature: domain Description: Recombinase Location: 1 746492-1 746855 bp Feature: domain Description: Zn_ribbon_recom Location: 1746897-1747095 bp Feature: domain Description: Zn_ribbon_recom Location: 1 746897-1 747095 bp Feature: gene Location: 1787810-1788238 bp Feature: gene Location: 1788835-1789644 bp Feature: gene Location: 1790144-1791424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1790588-1791194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 790588-1 791 1 94 bp Feature: gene Location: 1791519-1792220 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 1791546-1792185 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 1 791 546-1 7921 85 bp Feature: gene Location: 1792382-1792600 bp Feature: gene Location: 2743816-2744277 bp Feature: gene Location: 2744438-2744596 bp Feature: gene Location: 2744814-2745581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2745162-2745564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27451 62-2745564 bp Feature: gene Location: 2746195-2746440 bp Feature: domain Description: TatC Location: 2746222-2746372 bp Feature: domain Description: TatC Location: 2746222-2746372 bp Feature: gene Location: 2746963-2747097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ACAD (cl09933), Patatin_and_cPLA2 (cl11396), RVT-CRISPR, RVT-GII, AmpC (COG1680), YdhG (COG5646), GIIM (pfam08388), Resolvase (smart00857)
Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), ABC_MJ0796_LolCDE_FtsE (cd03255), TatC (pfam00902)

Seq: SJPU01000002.1 Planctomycetes bacterium Poly21 Poly21_contig00002, whole genome shotgun sequence (2647372 bp)
Overview 1 RT 1: 2645053-2647255 bp Neighborhood of RT #1 [2645053, 2647296] RVT-GII Feature: gene Location: 2645053-2645766 bp Feature: gene Location: 2646141-2646332 bp Feature: gene Location: 2646517-2647296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646865-2647255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 646865-2 6472 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SJPU01000012.1 Planctomycetes bacterium Poly21 Poly21_contig00012, whole genome shotgun sequence (26445 bp)
Overview 1 RT 1: 23720-26070 bp Neighborhood of RT #1 [23720, 26153] RVT-GII GIIM Feature: gene Location: 23720-24220 bp Feature: gene Location: 24425-25006 bp Feature: gene Location: 24849-26153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25197-25815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25197-25815 bp Feature: domain Description: GIIM Note: maturase Location: 25866-26070 bp Feature: domain Description: GIIM Note: maturase Location: 25866-26070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SJPU01000017.1 Planctomycetes bacterium Poly21 Poly21_contig00017, whole genome shotgun sequence (6541 bp)
Overview 1 RT 1: 135-6348 bp Neighborhood of RT #1 [135, 6348] RVT-GII GIIM RVT-GII Feature: gene Location: 135-815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138-363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138-363 bp Feature: domain Description: GIIM Note: maturase Location: 408-618 bp Feature: domain Description: GIIM Note: maturase Location: 4 08-618 bp Feature: gene Location: 1098-1700 bp Feature: gene Location: 1800-2339 bp Feature: gene Location: 2939-3163 bp Feature: gene Location: 3166-3570 bp Feature: gene Location: 3836-5362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4304-4994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 304 -4 994 bp Feature: gene Location: 5152-5664 bp Feature: gene Location: 5761-6348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)