myRT

myRT report for GCA_007860125.1_ASM786012v1

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Seq: SJPW01000002.1 Planctomycetes bacterium Poly51 Poly51_contig00002, whole genome shotgun sequence (1421708 bp)
Overview 1 RT 1: 356723-364771 bp Neighborhood of RT #1 [356723, 364779] RVT-Retrons PLN03124 PARP PRK00431 Feature: gene Location: 356723-358549 bp Feature: gene Location: 358879-360579 bp Feature: gene Location: 360584-362524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361679-362294 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361 679-362294 bp Feature: gene Location: 362621-364240 bp Feature: domain Description: PLN03124 Location: 362762-362939 bp Feature: domain Description: PLN031 24 Location: 362762-362939 bp Feature: domain Description: PARP Location: 363650-364229 bp Feature: domain Description: PARP Location: 363650-364229 bp Feature: gene Location: 364258-364779 bp Feature: domain Description: PRK00431 Location: 364264-364771 bp Feature: domain Description: PRK00431 Location: 364264-364771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PLN03124 (poly polymerase; Provisional), PARP (pfam00644), PRK00431 (ADP-ribose-binding protein)

Seq: SJPW01000003.1 Planctomycetes bacterium Poly51 Poly51_contig00003, whole genome shotgun sequence (1071311 bp)
Overview 1 RT 1: 857068-862142 bp Neighborhood of RT #1 [857068, 862144] RVT-GII RVT-GII GIIM KdgK mannonate_red_SDR_c Feature: gene Location: 857068-857256 bp Feature: gene Location: 857632-857856 bp Feature: gene Location: 858627-859457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859002-859446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859002 -859446 bp Feature: gene Location: 859473-860087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859482-859692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859482 -859692 bp Feature: domain Description: GIIM Note: maturase Location: 859767-859983 bp Feature: domain Description: GIIM Note: maturase Location: 859767-859983 bp Feature: gene Location: 860187-861275 bp Feature: domain Description: KdgK Location: 860232-861207 bp Feature: domain Description: KdgK Location: 8602 32 -8612 07 bp Feature: gene Location: 861332-862144 bp Feature: domain Description: mannonate_red_SDR_c Location: 861347-862142 bp Feature: domain Description: mannonate_red_SDR_c Location: 861347-862 142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KdgK (cd01166), mannonate_red_SDR_c (cd08935)

Seq: SJPW01000004.1 Planctomycetes bacterium Poly51 Poly51_contig00004, whole genome shotgun sequence (853177 bp)
Overview 1 RT 1: 669766-673488 bp 2 RT 2: 683532-688663 bp Neighborhood of RT #1 [669766, 673496] HsdM RVT-UG2 COG4270 ZupT ZupT Neighborhood of RT #2 [683532, 688887] RVT-GII GIIM DDE_Tnp_IS66 COG3682 Feature: gene Location: 669766-670581 bp Feature: gene Location: 670687-671043 bp Feature: domain Description: HsdM Location: 670693-671026 bp Feature: domain Description: HsdM Location: 670693 -671026 bp Feature: gene Location: 671123-672379 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 671249-672065 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 671249-672065 bp Feature: gene Location: 672410-672787 bp Feature: domain Description: COG4270 Location: 672428-672758 bp Feature: domain Description: COG4270 Location: 672428-672758 bp Feature: gene Location: 672780-673496 bp Feature: domain Description: ZupT Location: 672795-673032 bp Feature: domain Description: ZupT Location: 672795-673 03 2 bp Feature: domain Description: ZupT Location: 673098-673488 bp Feature: domain Description: ZupT Location: 673 098-673 488 bp Feature: gene Location: 683532-683879 bp Feature: gene Location: 683919-684215 bp Feature: gene Location: 684487-685872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684802-685420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684802-685420 bp Feature: domain Description: GIIM Note: maturase Location: 685468-685672 bp Feature: domain Description: GIIM Note: maturase Location: 685468-685672 bp Feature: gene Location: 686537-688066 bp Feature: domain Description: DDE_Tnp_IS66 Location: 687128-687932 bp Feature: domain Description: DDE_Tnp_IS66 Location: 687128-68793 2 bp Feature: gene Location: 688153-688887 bp Feature: domain Description: COG3682 Location: 688312-688663 bp Feature: domain Description: COG3 682 Location: 6883 12-688663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-UG2, COG4270 (Uncharacterized membrane protein ), ZupT (COG0428), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), COG3682 (Predicted transcriptional regulator )

Seq: SJPW01000005.1 Planctomycetes bacterium Poly51 Poly51_contig00005, whole genome shotgun sequence (727320 bp)
Overview 1 RT 1: 160685-165999 bp Neighborhood of RT #1 [160685, 166028] HXXSHH PSD2 RVT-GII PSD5 PSD4 PSCyt3 Feature: gene Location: 160685-162031 bp Feature: domain Description: HXXSHH Location: 160835-161741 bp Feature: domain Description: HXXSHH Location: 160835-16174 1 bp Feature: gene Location: 162046-162366 bp Feature: domain Description: PSD2 Location: 162139-162355 bp Feature: domain Description: PSD2 Location: 162139-162355 bp Feature: gene Location: 162578-164062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162986-163676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162986-163676 bp Feature: gene Location: 164107-164253 bp Feature: gene Location: 164460-166028 bp Feature: domain Description: PSD5 Location: 165138-165318 bp Feature: domain Description: PSD5 Location: 165138-165318 bp Feature: domain Description: PSD4 Location: 165348-165726 bp Feature: domain Description: PSD4 Location: 16534 8-165726 bp Feature: domain Description: PSCyt3 Location: 165783-165999 bp Feature: domain Description: PSCyt3 Location: 165783-165999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HXXSHH (pfam07586), PSD2 (pfam07624), RVT-GII, PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627)

Seq: SJPW01000006.1 Planctomycetes bacterium Poly51 Poly51_contig00006, whole genome shotgun sequence (718302 bp)
Overview 1 RT 1: 610756-615288 bp Neighborhood of RT #1 [610756, 615288] RVT-UNC Feature: gene Location: 610756-611196 bp Feature: gene Location: 611220-611351 bp Feature: gene Location: 611524-613905 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 612700-613099 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 612700-613099 bp Feature: gene Location: 613924-614079 bp Feature: gene Location: 614218-615288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28/RVT-CRISPR/RVT-DGRs/RVT-GII(RVT-UNC)