myRT

myRT report for GCA_007860265.1_ASM786026v1

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Seq: SZXO01000005.1 Pseudomonas aeruginosa strain SF2, whole genome shotgun sequence (384325 bp)
Overview 1 RT 1: 289901-300634 bp Neighborhood of RT #1 [289901, 300636] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 289901-290236 bp Feature: domain Description: NERD Location: 290000-290171 bp Feature: domain Description: NERD Location: 290000-2901 71 bp Feature: gene Location: 290329-291450 bp Feature: domain Description: COG3177 Location: 290347-291439 bp Feature: domain Description: COG31 77 Location: 290347-291 439 bp Feature: gene Location: 292173-293858 bp Feature: RT Description: RVT_N Location: 292230-292470 bp Feature: RT Description: RVT_N Location: 292230-292470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292518-293154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29251 8-2931 54 bp Feature: domain Description: GIIM Note: maturase Location: 293208-293439 bp Feature: domain Description: GIIM Note: maturase Location: 293208-293439 bp Feature: domain Description: HNH Note: nucleases Location: 293691-293829 bp Feature: domain Description: HNH Note: nucleases Location: 293691 -293829 bp Feature: gene Location: 294939-298676 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295047-295704 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295047-295704 bp Feature: domain Description: PRK09776 Location: 295917-296388 bp Feature: domain Description: PRK09776 Location: 29591 7-296388 bp Feature: domain Description: PAS Location: 296433-296970 bp Feature: domain Description: PAS Location: 296433-296970 bp Feature: domain Description: PRK10060 Location: 296979-298626 bp Feature: domain Description: PRK1 0060 Location: 296979-298626 bp Feature: gene Location: 298783-300636 bp Feature: domain Description: PRK05658 Location: 298795-300634 bp Feature: domain Description: PRK05658 Location: 298795-300634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)