myRT

myRT report for GCA_007896575.1_ASM789657v1

Download annotations/find similar RTs

Seq: VOHV01000001.1 Bacteroides fragilis strain AD135F_1B NODE_1_length_824632_cov_65.050810, whole genome shotgun sequence (824632 bp)
Overview 1 RT 1: 554396-562788 bp Neighborhood of RT #1 [554396, 563966] N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase Feature: gene Location: 554396-558433 bp Ori: TWV44122.1 Feature: domain Description: N6_Mtase Location: 554921-555317 bp Feature: domain Description: N6_Mtase Location: 554921 -55531 7 bp Feature: domain Description: COG4646 Location: 556085-557816 bp Feature: domain Description: COG4646 Location: 556085-55781 6 bp Feature: gene Location: 558921-559124 bp Feature: gene Location: 559090-560757 bp Ori: TWV44124.1 Gene: ltrA Feature: domain Description: RVT_N Location: 559144-559387 bp Feature: domain Description: RVT_N Location: 5591 44-559387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559432-560080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559432-560080 bp Feature: domain Description: GIIM Note: maturase Location: 560134-560365 bp Feature: domain Description: GIIM Note: maturase Location: 5601 34-560365 bp Feature: gene Location: 560741-561838 bp Feature: gene Location: 562101-563966 bp Ori: TWV44126.1 Feature: domain Description: KAP_NTPase Location: 562140-562788 bp Feature: domain Description: KAP_NTPase Location: 5621 40-562788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KAP_NTPase (pfam07693)

Seq: VOHV01000018.1 Bacteroides fragilis strain AD135F_1B NODE_18_length_42195_cov_59.178687, whole genome shotgun sequence (42195 bp)
Overview 1 RT 1: 37552-41430 bp Neighborhood of RT #1 [37552, 41483] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 37552-37962 bp Ori: TWV36481.1 Feature: domain Description: Cas_Cmr5 Location: 37600-37846 bp Feature: domain Description: Cas_Cmr5 Location: 37600-37846 bp Feature: gene Location: 37965-38909 bp Ori: TWV36482.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 38121-38898 bp Feature: domain Description: Cmr6_III-B Location: 3812 1-38898 bp Feature: gene Location: 38929-41199 bp Ori: TWV36483.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39136-39742 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39136-39742 bp Feature: domain Description: Cas1_I-II-III Location: 40201-41158 bp Feature: domain Description: Cas1_I-II-III Location: 402 01-41158 bp Feature: gene Location: 41193-41483 bp Ori: TWV36484.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 41220-41430 bp Feature: domain Description: Cas2 _I_II_III Location: 412 2 0-41430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: VOHV01000007.1 Bacteroides fragilis strain AD135F_1B NODE_7_length_303597_cov_68.634277, whole genome shotgun sequence (303597 bp)
Overview 1 RT 1: 172018-180982 bp 2 RT 2: 224817-228775 bp Neighborhood of RT #1 [172018, 180984] RNase_Z rpsA RVT-Retrons GlnA3 Neighborhood of RT #2 [224817, 228775] RVT-UG27 Feature: gene Location: 172018-172932 bp Ori: TWV40163.1 Feature: domain Description: RNase_Z Location: 172033-172924 bp Feature: domain Description: RNase_Z Location: 17203 3 -172924 bp Feature: gene Location: 173082-174875 bp Ori: TWV40164.1 Feature: domain Description: rpsA Location: 173160-174768 bp Feature: domain Description: rpsA Location: 173 160-174768 bp Feature: gene Location: 175017-176129 bp Ori: TWV40165.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175332-175881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1753 3 2-175881 bp Feature: gene Location: 176336-178555 bp Feature: gene Location: 178795-180984 bp Ori: TWV40167.1 Feature: domain Description: GlnA3 Location: 178867-180982 bp Feature: domain Description: GlnA3 Location: 178867-180982 bp Feature: gene Location: 224817-225296 bp Feature: gene Location: 225346-225843 bp Feature: gene Location: 226166-227431 bp Ori: TWV40216.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 226355-226991 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2263 55-226991 bp Feature: gene Location: 227449-228075 bp Feature: gene Location: 228119-228775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968), RVT-UG27