myRT

myRT report for GCA_007896605.1_ASM789660v1

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Seq: VOHT01000007.1 Bacteroides fragilis strain AD135F_3B NODE_7_length_303597_cov_75.020203, whole genome shotgun sequence (303597 bp)
Overview 1 RT 1: 172018-180982 bp 2 RT 2: 224817-228775 bp Neighborhood of RT #1 [172018, 180984] RNase_Z rpsA RVT-Retrons GlnA3 Neighborhood of RT #2 [224817, 228775] RVT-UG27 Feature: gene Location: 172018-172932 bp Ori: TWV47145.1 Feature: domain Description: RNase_Z Location: 172033-172924 bp Feature: domain Description: RNase_Z Location: 1 72033-1 72924 bp Feature: gene Location: 173082-174875 bp Ori: TWV47146.1 Feature: domain Description: rpsA Location: 173160-174768 bp Feature: domain Description: rpsA Location: 1 731 60-1 74768 bp Feature: gene Location: 175017-176129 bp Ori: TWV47147.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175332-175881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 75332-1 75881 bp Feature: gene Location: 176336-178555 bp Feature: gene Location: 178795-180984 bp Ori: TWV47149.1 Feature: domain Description: GlnA3 Location: 178867-180982 bp Feature: domain Description: GlnA3 Location: 1 78867-1 80982 bp Feature: gene Location: 224817-225296 bp Feature: gene Location: 225346-225843 bp Feature: gene Location: 226166-227431 bp Ori: TWV47198.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 226355-226991 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 226355-226991 bp Feature: gene Location: 227449-228075 bp Feature: gene Location: 228119-228775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968), RVT-UG27

Seq: VOHT01000011.1 Bacteroides fragilis strain AD135F_3B NODE_11_length_193641_cov_65.929426, whole genome shotgun sequence (193641 bp)
Overview 1 RT 1: 39916-43794 bp Neighborhood of RT #1 [39916, 43847] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 39916-40326 bp Ori: TWV45401.1 Feature: domain Description: Cas_Cmr5 Location: 39964-40210 bp Feature: domain Description: Cas_Cmr5 Location: 39964-402 10 bp Feature: gene Location: 40329-41273 bp Ori: TWV45402.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 40485-41262 bp Feature: domain Description: Cmr6_III-B Location: 40485-412 62 bp Feature: gene Location: 41293-43563 bp Ori: TWV45403.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 41500-42106 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 41500-42 106 bp Feature: domain Description: Cas1_I-II-III Location: 42565-43522 bp Feature: domain Description: Cas1_I-II-III Location: 42 565-4352 2 bp Feature: gene Location: 43557-43847 bp Ori: TWV45404.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 43584-43794 bp Feature: domain Description: Cas2 _I_II_III Location: 43584-43794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: VOHT01000001.1 Bacteroides fragilis strain AD135F_3B NODE_1_length_824632_cov_69.720210, whole genome shotgun sequence (824632 bp)
Overview 1 RT 1: 554396-562788 bp Neighborhood of RT #1 [554396, 563966] N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase Feature: gene Location: 554396-558433 bp Ori: TWV52495.1 Feature: domain Description: N6_Mtase Location: 554921-555317 bp Feature: domain Description: N6_Mtase Location: 554921-5553 17 bp Feature: domain Description: COG4646 Location: 556085-557816 bp Feature: domain Description: COG4646 Location: 556085-557816 bp Feature: gene Location: 558921-559124 bp Feature: gene Location: 559090-560757 bp Ori: TWV52497.1 Gene: ltrA Feature: domain Description: RVT_N Location: 559144-559387 bp Feature: domain Description: RVT_N Location: 559144-5593 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559432-560080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55943 2-560080 bp Feature: domain Description: GIIM Note: maturase Location: 560134-560365 bp Feature: domain Description: GIIM Note: maturase Location: 56013 4-5603 65 bp Feature: gene Location: 560741-561838 bp Feature: gene Location: 562101-563966 bp Ori: TWV52499.1 Feature: domain Description: KAP_NTPase Location: 562140-562788 bp Feature: domain Description: KAP_NTPase Location: 562140-562788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KAP_NTPase (pfam07693)