myRT

myRT report for GCA_007896675.1_ASM789667v1

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Seq: VOIJ01000011.1 Bacteroides fragilis strain AD126T_2B NODE_11_length_147781_cov_71.741653, whole genome shotgun sequence (147781 bp)
Overview 1 RT 1: 139694-142836 bp Neighborhood of RT #1 [139694, 142853] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 139694-139990 bp Feature: domain Description: DUF4133 Location: 139736-139913 bp Feature: domain Description: DUF41 33 Location: 1 39736-1 3991 3 bp Feature: gene Location: 140003-140197 bp Feature: domain Description: DUF4134 Location: 140093-140183 bp Feature: domain Description: DUF41 34 Location: 1 40093-1 401 83 bp Feature: gene Location: 140222-142033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140486-141308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40486-1 41 308 bp Feature: domain Description: Intron_maturas2 Location: 141497-141707 bp Feature: domain Description: Intron_maturas2 Location: 1 41 497-1 41 707 bp Feature: domain Description: HNHc Note: nucleases Location: 141857-141962 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 857-1 41 962 bp Feature: gene Location: 142213-142563 bp Feature: gene Location: 142575-142853 bp Feature: domain Description: DUF4134 Location: 142635-142836 bp Feature: domain Description: DUF41 34 Location: 1 42635-1 42836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VOIJ01000001.1 Bacteroides fragilis strain AD126T_2B NODE_1_length_754196_cov_54.970794, whole genome shotgun sequence (754196 bp)
Overview 1 RT 1: 439615-444377 bp Neighborhood of RT #1 [439615, 444469] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 439615-439839 bp Feature: gene Location: 440538-440828 bp Feature: domain Description: Cas2_I_II_III Location: 440565-440775 bp Feature: domain Description: Cas2 _I_II_III Location: 440565-440775 bp Feature: gene Location: 440822-443092 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 441029-441635 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 44102 9-441635 bp Feature: domain Description: Cas1_I-II-III Location: 442094-443051 bp Feature: domain Description: Cas1_I-II-III Location: 442 094-443051 bp Feature: gene Location: 443112-444056 bp Feature: domain Description: Cmr6_III-B Location: 443268-444045 bp Feature: domain Description: Cmr6_III-B Location: 4432 68-444045 bp Feature: gene Location: 444059-444469 bp Feature: domain Description: Cas_Cmr5 Location: 444107-444377 bp Feature: domain Description: Cas_Cmr5 Location: 444107-444377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: VOIJ01000007.1 Bacteroides fragilis strain AD126T_2B NODE_7_length_329276_cov_64.038524, whole genome shotgun sequence (329276 bp)
Overview 1 RT 1: 103426-112384 bp Neighborhood of RT #1 [103426, 112392] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103426-105615 bp Feature: domain Description: GlnA3 Location: 103498-105613 bp Feature: domain Description: GlnA3 Location: 103 498-105613 bp Feature: gene Location: 105855-108074 bp Feature: gene Location: 108281-109393 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108596-109145 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108596-109145 bp Feature: gene Location: 109535-111328 bp Feature: domain Description: rpsA Location: 109613-111221 bp Feature: domain Description: rpsA Location: 109613 -111221 bp Feature: gene Location: 111478-112392 bp Feature: domain Description: RNase_Z Location: 111493-112384 bp Feature: domain Description: RNase_Z Location: 111493 -1123 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)