myRT

myRT report for GCA_007896685.1_ASM789668v1

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Seq: VOHZ01000012.1 Bacteroides fragilis strain AD126T_1B NODE_12_length_147781_cov_55.944526, whole genome shotgun sequence (147781 bp)
Overview 1 RT 1: 139694-142836 bp Neighborhood of RT #1 [139694, 142853] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 139694-139990 bp Feature: domain Description: DUF4133 Location: 139736-139913 bp Feature: domain Description: DUF41 33 Location: 1 39736-1 3991 3 bp Feature: gene Location: 140003-140197 bp Feature: domain Description: DUF4134 Location: 140093-140183 bp Feature: domain Description: DUF41 34 Location: 1 40093-1 401 83 bp Feature: gene Location: 140222-142033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140486-141308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40486-1 41 308 bp Feature: domain Description: Intron_maturas2 Location: 141497-141707 bp Feature: domain Description: Intron_maturas2 Location: 1 41 497-1 41 707 bp Feature: domain Description: HNHc Note: nucleases Location: 141857-141962 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 857-1 41 962 bp Feature: gene Location: 142213-142563 bp Feature: gene Location: 142575-142853 bp Feature: domain Description: DUF4134 Location: 142635-142836 bp Feature: domain Description: DUF41 34 Location: 1 42635-1 42836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VOHZ01000003.1 Bacteroides fragilis strain AD126T_1B NODE_3_length_584614_cov_44.591127, whole genome shotgun sequence (584614 bp)
Overview 1 RT 1: 309728-314582 bp Neighborhood of RT #1 [309728, 314582] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 309728-310138 bp Feature: domain Description: Cas_Cmr5 Location: 309776-310046 bp Feature: domain Description: Cas_Cmr5 Location: 309776-310046 bp Feature: gene Location: 310135-311085 bp Feature: domain Description: Cmr6_III-B Location: 310297-311074 bp Feature: domain Description: Cmr6_III-B Location: 3102 97-311074 bp Feature: gene Location: 311105-313375 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 311312-311918 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 311312 -311918 bp Feature: domain Description: Cas1_I-II-III Location: 312377-313334 bp Feature: domain Description: Cas1_I-II-III Location: 312 377-313334 bp Feature: gene Location: 313369-313659 bp Feature: domain Description: Cas2_I_II_III Location: 313396-313606 bp Feature: domain Description: Cas2 _I_II_III Location: 313396-313606 bp Feature: gene Location: 314358-314582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: VOHZ01000006.1 Bacteroides fragilis strain AD126T_1B NODE_6_length_328935_cov_53.266551, whole genome shotgun sequence (328935 bp)
Overview 1 RT 1: 103085-112043 bp Neighborhood of RT #1 [103085, 112051] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103085-105274 bp Feature: domain Description: GlnA3 Location: 103157-105272 bp Feature: domain Description: GlnA3 Location: 103 157-105272 bp Feature: gene Location: 105514-107733 bp Feature: gene Location: 107940-109052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108255-108804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108255-108804 bp Feature: gene Location: 109194-110987 bp Feature: domain Description: rpsA Location: 109272-110880 bp Feature: domain Description: rpsA Location: 109272-110880 bp Feature: gene Location: 111137-112051 bp Feature: domain Description: RNase_Z Location: 111152-112043 bp Feature: domain Description: RNase_Z Location: 111152-112043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)