myRT

myRT report for GCA_007896695.1_ASM789669v1

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Seq: VOHW01000047.1 Parabacteroides distasonis strain CFPLTA003_1B NODE_47_length_2436_cov_195.332178, whole genome shotgun sequence (2436 bp)
Overview 1 RT 1: 49-1925 bp Neighborhood of RT #1 [49, 2299] RVT_N RVT-GII GIIM Feature: gene Location: 49-348 bp Feature: gene Location: 644-2299 bp Ori: TWV56291.1 Gene: ltrA Feature: domain Description: RVT_N Location: 701-938 bp Feature: domain Description: RVT_N Location: 701 -938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1 637 bp Feature: domain Description: GIIM Note: maturase Location: 1694-1925 bp Feature: domain Description: GIIM Note: maturase Location: 1 694-1 925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VOHW01000046.1 Parabacteroides distasonis strain CFPLTA003_1B NODE_46_length_2491_cov_154.131980, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 574-2356 bp Neighborhood of RT #1 [574, 2385] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 574-2385 bp Ori: TWV56419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: domain Description: Intron_maturas2 Location: 1735-2050 bp Feature: domain Description: Intron_maturas2 Location: 1735-2 050 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2356 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 06-2 356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VOHW01000009.1 Parabacteroides distasonis strain CFPLTA003_1B NODE_9_length_211854_cov_78.503053, whole genome shotgun sequence (211854 bp)
Overview 1 RT 1: 75800-78630 bp Neighborhood of RT #1 [75800, 78630] RVT-DGRs Feature: gene Location: 75800-76042 bp Feature: gene Location: 76232-76717 bp Feature: gene Location: 76717-78018 bp Ori: TWV60453.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76930-77527 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7693 0-77527 bp Feature: gene Location: 78224-78469 bp Feature: gene Location: 78397-78630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VOHW01000004.1 Parabacteroides distasonis strain CFPLTA003_1B NODE_4_length_416808_cov_60.717664, whole genome shotgun sequence (416808 bp)
Overview 1 RT 1: 266520-274310 bp Neighborhood of RT #1 [266520, 274450] Wza CvfB RVT-GII GIIM lepA TPR TPR Feature: gene Location: 266520-267332 bp Ori: TWV62278.1 Feature: domain Description: Wza Location: 266655-267204 bp Feature: domain Description: Wza Location: 266655-267204 bp Feature: gene Location: 267528-268367 bp Ori: TWV62279.1 Feature: domain Description: CvfB Location: 267531-268353 bp Feature: domain Description: CvfB Location: 267531-268353 bp Feature: gene Location: 268471-269874 bp Ori: TWV62280.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268813-269431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268813-2694 31 bp Feature: domain Description: GIIM Note: maturase Location: 269482-269716 bp Feature: domain Description: GIIM Note: maturase Location: 2694 82-269716 bp Feature: gene Location: 270378-272165 bp Ori: TWV62281.1 Gene: lepA Feature: domain Description: lepA Location: 270384-272163 bp Feature: domain Description: lepA Location: 270384 -272163 bp Feature: gene Location: 272252-274450 bp Ori: TWV62282.1 Feature: domain Description: TPR Location: 273728-274001 bp Feature: domain Description: TPR Location: 273728-274 001 bp Feature: domain Description: TPR Location: 274046-274310 bp Feature: domain Description: TPR Location: 274 04 6-274 310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Wza (COG1596), CvfB (COG2996), RVT-GII, GIIM (pfam08388), lepA (TIGR01393), TPR (smart00028)

Seq: VOHW01000011.1 Parabacteroides distasonis strain CFPLTA003_1B NODE_11_length_172138_cov_80.456872, whole genome shotgun sequence (172138 bp)
Overview 1 RT 1: 89361-93294 bp Neighborhood of RT #1 [89361, 93294] RVT-UG27 Feature: gene Location: 89361-90008 bp Feature: gene Location: 90022-90690 bp Feature: gene Location: 90683-91945 bp Ori: TWV60011.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 90875-91511 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 90875 -915 11 bp Feature: gene Location: 92268-92765 bp Feature: gene Location: 92815-93294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27