myRT

myRT report for GCA_007896795.1_ASM789679v1

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Seq: VOHX01000001.1 Bacteroides fragilis strain TL139C_1B NODE_1_length_1573133_cov_65.111222, whole genome shotgun sequence (1573133 bp)
Overview 1 RT 1: 219205-222502 bp 2 RT 2: 1075621-1080331 bp 3 RT 3: 1378981-1382133 bp Neighborhood of RT #1 [219205, 222687] RVT-DGRs DUF4494 Neighborhood of RT #2 [1075621, 1080331] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #3 [1378981, 1382150] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 219205-219681 bp Feature: gene Location: 219697-220077 bp Feature: gene Location: 220282-221268 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 220492-221077 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 220492-221 077 bp Feature: gene Location: 221582-222067 bp Feature: gene Location: 222070-222687 bp Feature: domain Description: DUF4494 Location: 222088-222502 bp Feature: domain Description: DUF4494 Location: 222088-222502 bp Feature: gene Location: 1075621-1076031 bp Feature: domain Description: Cas_Cmr5 Location: 1075669-1075915 bp Feature: domain Description: Cas_Cmr5 Location: 1 075669-1 07591 5 bp Feature: gene Location: 1076034-1076978 bp Feature: domain Description: Cmr6_III-B Location: 1076190-1076967 bp Feature: domain Description: Cmr6_III-B Location: 1 0761 90-1 076967 bp Feature: gene Location: 1076998-1079268 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1077205-1077811 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 077205-1 07781 1 bp Feature: domain Description: Cas1_I-II-III Location: 1078270-1079227 bp Feature: domain Description: Cas1 _I-II-III Location: 1 078270-1 079227 bp Feature: gene Location: 1079262-1079552 bp Feature: domain Description: Cas2_I_II_III Location: 1079289-1079499 bp Feature: domain Description: Cas2_I_II_III Location: 1 079289-1 079499 bp Feature: gene Location: 1080203-1080331 bp Feature: gene Location: 1378981-1379274 bp Feature: domain Description: DUF4133 Location: 1379020-1379200 bp Feature: domain Description: DUF41 33 Location: 1 379020-1 379200 bp Feature: gene Location: 1379288-1379482 bp Feature: domain Description: DUF4134 Location: 1379378-1379468 bp Feature: domain Description: DUF41 34 Location: 1 379378-1 379468 bp Feature: gene Location: 1379507-1381318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379771-1380593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379771 -1 380593 bp Feature: domain Description: Intron_maturas2 Location: 1380782-1380992 bp Feature: domain Description: Intron_maturas2 Location: 1 380782-1 380992 bp Feature: domain Description: HNHc Note: nucleases Location: 1381142-1381247 bp Feature: domain Description: HNHc Note: nucleases Location: 1 381 1 42-1 381 247 bp Feature: gene Location: 1381498-1381848 bp Feature: gene Location: 1381860-1382150 bp Feature: domain Description: DUF4134 Location: 1381935-1382133 bp Feature: domain Description: DUF41 34 Location: 1 381 935-1 3821 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF4494 (pfam14902), Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII
Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VOHX01000002.1 Bacteroides fragilis strain TL139C_1B NODE_2_length_732017_cov_70.947825, whole genome shotgun sequence (732017 bp)
Overview 1 RT 1: 663137-672095 bp Neighborhood of RT #1 [663137, 672103] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 663137-665326 bp Feature: domain Description: GlnA3 Location: 663212-665324 bp Feature: domain Description: GlnA3 Location: 6632 12 -66532 4 bp Feature: gene Location: 665566-667785 bp Feature: gene Location: 667992-669104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 668307-668856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 668307-668856 bp Feature: gene Location: 669246-671039 bp Feature: domain Description: rpsA Location: 669324-670932 bp Feature: domain Description: rpsA Location: 66932 4-670932 bp Feature: gene Location: 671189-672103 bp Feature: domain Description: RNase_Z Location: 671204-672095 bp Feature: domain Description: RNase_Z Location: 6712 04-672 095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)