myRT

myRT report for GCA_007990715.1_ASM799071v1

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Seq: BJWY01000112.1 Nocardia seriolae NBRC 15557 DNA, sequence112, whole genome shotgun sequence (25447 bp)
Overview 1 RT 1: 17-3177 bp Neighborhood of RT #1 [17, 3278] RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 DUF4096 Feature: gene Location: 17-247 bp Feature: gene Location: 264-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1 323 bp Feature: domain Description: Intron_maturas2 Location: 1440-1653 bp Feature: domain Description: Intron_maturas2 Location: 1 440-1 653 bp Feature: domain Description: HNHc Note: nucleases Location: 1848-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1 848-2004 bp Feature: gene Location: 2506-2841 bp Feature: domain Description: DDE_Tnp_1 Location: 2512-2761 bp Feature: domain Description: DDE_Tnp_1 Location: 251 2-2761 bp Feature: gene Location: 2916-3278 bp Feature: domain Description: DUF4096 Location: 2949-3177 bp Feature: domain Description: DUF4096 Location: 2949-31 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_1 (pfam01609), DUF4096 (pfam13340)

Seq: BJWY01000139.1 Nocardia seriolae NBRC 15557 DNA, sequence139, whole genome shotgun sequence (18953 bp)
Overview 1 RT 1: 2-1899 bp Neighborhood of RT #1 [2, 1922] RVT-GII COG3393 Feature: gene Location: 2-136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6-134 bp Feature: gene Location: 647-952 bp Feature: gene Location: 1278-1922 bp Feature: domain Description: COG3393 Location: 1518-1899 bp Feature: domain Description: COG3393 Location: 1518-1899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3393 (Predicted acetyltransferase, GNAT family )

Seq: BJWY01000172.1 Nocardia seriolae NBRC 15557 DNA, sequence172, whole genome shotgun sequence (13077 bp)
Overview 1 RT 1: 95-3736 bp Neighborhood of RT #1 [95, 3942] RVT-GII GIIM MngR YdcF-like Feature: gene Location: 95-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 -1061 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 113 6-13 67 bp Feature: gene Location: 2498-3262 bp Feature: domain Description: MngR Location: 2507-3242 bp Feature: domain Description: MngR Location: 2507-3 242 bp Feature: gene Location: 3274-3942 bp Feature: domain Description: YdcF-like Location: 3373-3736 bp Feature: domain Description: YdcF-like Location: 3 3 73 -3 73 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MngR (COG2188), YdcF-like (cl00630)

Seq: BJWY01000202.1 Nocardia seriolae NBRC 15557 DNA, sequence202, whole genome shotgun sequence (7381 bp)
Overview 1 RT 1: 3-3283 bp Neighborhood of RT #1 [3, 3283] DDE_5 RVT-GII Feature: gene Location: 3-1349 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: gene Location: 1369-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684 -1981 bp Feature: gene Location: 2345-3025 bp Feature: gene Location: 3104-3283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII