myRT

myRT report for GCA_007990815.1_ASM799081v1

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Seq: BJXD01000002.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 DNA, sequence002, whole genome shotgun sequence (108100 bp)
Overview 1 RT 1: 19875-29989 bp Neighborhood of RT #1 [19875, 30294] WGR_DNA_ligase TPR_19 RVT-Retrons addB_alphas Feature: gene Location: 19875-21521 bp Feature: gene Location: 21526-24852 bp Feature: domain Description: WGR_DNA_ligase Location: 21541-21760 bp Feature: domain Description: WGR_DNA_ligase Location: 21 541 -21 760 bp Feature: domain Description: TPR_19 Location: 22018-22168 bp Feature: domain Description: TPR_1 9 Location: 2201 8-221 68 bp Feature: gene Location: 24863-26374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25397-26015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25397-2601 5 bp Feature: gene Location: 27079-27210 bp Feature: gene Location: 27535-30294 bp Feature: domain Description: addB_alphas Location: 28930-29989 bp Feature: domain Description: addB_alphas Location: 28930-29989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), TPR_19 (pfam14559), RVT-Retrons, addB_alphas (TIGR02786)

Seq: BJXD01000007.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 DNA, sequence007, whole genome shotgun sequence (68624 bp)
Overview 1 RT 1: 1149-4875 bp 2 RT 2: 11833-16893 bp Neighborhood of RT #1 [1149, 4970] smpB VF530 RVT-Retrons DnaB DUF3127 Neighborhood of RT #2 [11833, 16893] RVT-Retrons WYL Feature: gene Location: 1149-1604 bp Feature: domain Description: smpB Location: 1167-1593 bp Feature: domain Description: smpB Location: 1167-1593 bp Feature: gene Location: 1708-1935 bp Feature: domain Description: VF530 Location: 1729-1912 bp Feature: domain Description: VF530 Location: 172 9-1912 bp Feature: gene Location: 1967-3274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2369-2957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 369-2 957 bp Feature: gene Location: 3308-4405 bp Feature: domain Description: DnaB Location: 3362-4280 bp Feature: domain Description: DnaB Location: 3362 -42 80 bp Feature: gene Location: 4620-4970 bp Feature: domain Description: DUF3127 Location: 4629-4875 bp Feature: domain Description: DUF312 7 Location: 462 9-4875 bp Feature: gene Location: 11833-12531 bp Feature: gene Location: 12533-13633 bp Feature: gene Location: 13658-14962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13880-14546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13880-14546 bp Feature: gene Location: 15359-16378 bp Feature: domain Description: WYL Location: 15833-16355 bp Feature: domain Description: WYL Location: 15833-16355 bp Feature: gene Location: 16456-16893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT smpB (TIGR00086), VF530 (pfam09905), RVT-Retrons, DnaB (TIGR00665), DUF3127 (pfam11325), WYL (pfam13280)

Seq: BJXD01000079.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 DNA, sequence079, whole genome shotgun sequence (16374 bp)
Overview 1 RT 1: 379-3302 bp Neighborhood of RT #1 [379, 3302] YigE RVT-GII Feature: gene Location: 379-1119 bp Feature: domain Description: YigE Location: 436-1108 bp Feature: domain Description: YigE Location: 43 6-1108 bp Feature: gene Location: 1945-2703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323-2602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 23 -2602 bp Feature: gene Location: 2713-2853 bp Feature: gene Location: 2907-3302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YigE (COG3698)